Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GQ1 entry

There are 6 chains in PDB entry 5GQ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 117	GLU 325
B	ARG 119	GLN 329
C	LYS 117	PHE 328
D	HIS 118	PHE 328
E	HIS 118	PHE 328
F	HIS 118	PHE 328

There are 35 helices in PDB entry 5GQ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	134	150	Right-handed alpha
Helix 2	AA2	A	184	194	Right-handed alpha
Helix 3	AA3	A	205	209	Right-handed 310
Helix 4	AA4	A	234	241	Right-handed alpha
Helix 5	AA5	A	262	267	Right-handed alpha
Helix 6	AA6	A	302	325	Right-handed alpha
Helix 7	AA7	B	134	150	Right-handed alpha
Helix 8	AA8	B	186	194	Right-handed alpha
Helix 9	AA9	B	205	209	Right-handed 310
Helix 10	AB1	B	235	240	Right-handed alpha
Helix 11	AB2	B	252	255	Right-handed 310
Helix 12	AB3	B	262	267	Right-handed alpha
Helix 13	AB4	B	302	327	Right-handed alpha
Helix 14	AB5	C	134	150	Right-handed alpha
Helix 15	AB6	C	184	194	Right-handed alpha
Helix 16	AB7	C	252	255	Right-handed 310
Helix 17	AB8	C	262	267	Right-handed alpha
Helix 18	AB9	C	302	328	Right-handed alpha
Helix 19	AC1	D	134	150	Right-handed alpha
Helix 20	AC2	D	185	194	Right-handed alpha
Helix 21	AC3	D	237	241	Right-handed 310
Helix 22	AC4	D	262	268	Right-handed alpha
Helix 23	AC5	D	282	287	Right-handed alpha
Helix 24	AC6	D	302	328	Right-handed alpha
Helix 25	AC7	E	134	150	Right-handed alpha
Helix 26	AC8	E	185	194	Right-handed alpha
Helix 27	AC9	E	238	242	Right-handed 310
Helix 28	AD1	E	252	255	Right-handed 310
Helix 29	AD2	E	262	268	Right-handed alpha
Helix 30	AD3	E	303	328	Right-handed alpha
Helix 31	AD4	F	135	150	Right-handed alpha
Helix 32	AD5	F	187	194	Right-handed alpha
Helix 33	AD6	F	252	255	Right-handed 310
Helix 34	AD7	F	262	267	Right-handed alpha
Helix 35	AD8	F	302	328	Right-handed alpha

There are 7 sheets in PDB entry 5GQ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	172	175	parallel
Strand 3	A	217	222	parallel
Strand 4	A	123	128	parallel
Strand 5	A	242	250	parallel
Strand 6	A	290	294	anti-parallel
Strand 7	A	300	301	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	260	261	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	156	first strand
Strand 2	B	172	175	parallel
Strand 3	B	217	222	parallel
Strand 4	B	123	128	parallel
Strand 5	B	244	250	parallel
Strand 6	B	290	294	anti-parallel
Strand 7	B	300	301	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	157	first strand
Strand 2	C	172	176	parallel
Strand 3	C	217	222	parallel
Strand 4	C	123	128	parallel
Strand 5	C	242	250	parallel
Strand 6	C	290	294	anti-parallel
Strand 7	C	300	301	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	172	178	parallel
Strand 3	D	217	222	parallel
Strand 4	D	123	128	parallel
Strand 5	D	244	250	parallel
Strand 6	D	290	294	anti-parallel
Strand 7	D	300	301	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	157	first strand
Strand 2	E	172	178	parallel
Strand 3	E	217	222	parallel
Strand 4	E	123	128	parallel
Strand 5	E	244	250	parallel
Strand 6	E	290	294	anti-parallel
Strand 7	E	300	302	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	155	first strand
Strand 2	F	172	176	parallel
Strand 3	F	217	221	parallel
Strand 4	F	123	128	parallel
Strand 5	F	244	250	parallel
Strand 6	F	290	294	anti-parallel
Strand 7	F	300	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GQ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQ1