Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GQ9 entry

There are 6 chains in PDB entry 5GQ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 3	VAL 685
C	C 1	T 16
D	A 4	G 19
B	HIS 3	VAL 685
E	C 1	T 16
F	A 4	G 19

There are 38 helices in PDB entry 5GQ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	53	Right-handed alpha
Helix 2	AA2	A	69	73	Right-handed 310
Helix 3	AA3	A	102	123	Right-handed alpha
Helix 4	AA4	A	178	183	Right-handed alpha
Helix 5	AA5	A	225	231	Right-handed alpha
Helix 6	AA6	A	266	270	Right-handed 310
Helix 7	AA7	A	282	301	Right-handed alpha
Helix 8	AA8	A	329	331	Right-handed 310
Helix 9	AA9	A	332	337	Right-handed alpha
Helix 10	AB1	A	358	373	Right-handed alpha
Helix 11	AB2	A	384	387	Right-handed 310
Helix 12	AB3	A	388	401	Right-handed alpha
Helix 13	AB4	A	414	428	Right-handed alpha
Helix 14	AB5	A	443	459	Right-handed alpha
Helix 15	AB6	A	515	535	Right-handed alpha
Helix 16	AB7	A	554	564	Right-handed alpha
Helix 17	AB8	A	627	639	Right-handed alpha
Helix 18	AB9	A	653	670	Right-handed alpha
Helix 19	AC1	B	42	53	Right-handed alpha
Helix 20	AC2	B	69	73	Right-handed 310
Helix 21	AC3	B	102	123	Right-handed alpha
Helix 22	AC4	B	178	184	Right-handed alpha
Helix 23	AC5	B	222	229	Right-handed alpha
Helix 24	AC6	B	266	270	Right-handed 310
Helix 25	AC7	B	282	301	Right-handed alpha
Helix 26	AC8	B	329	331	Right-handed 310
Helix 27	AC9	B	332	337	Right-handed alpha
Helix 28	AD1	B	358	372	Right-handed alpha
Helix 29	AD2	B	384	387	Right-handed 310
Helix 30	AD3	B	388	401	Right-handed alpha
Helix 31	AD4	B	414	428	Right-handed alpha
Helix 32	AD5	B	443	459	Right-handed alpha
Helix 33	AD6	B	515	535	Right-handed alpha
Helix 34	AD7	B	554	564	Right-handed alpha
Helix 35	AD8	B	608	612	Right-handed 310
Helix 36	AD9	B	627	639	Right-handed alpha
Helix 37	AE1	B	653	670	Right-handed alpha
Helix 38	AE2	B	671	674	Right-handed 310

There are 12 sheets in PDB entry 5GQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	133	142	anti-parallel
Strand 3	A	145	157	anti-parallel
Strand 4	A	162	175	anti-parallel
Strand 5	A	6	18	anti-parallel
Strand 6	A	307	315	anti-parallel
Strand 7	A	592	594	anti-parallel
Strand 8	A	600	604	anti-parallel
Strand 9	A	617	623	anti-parallel
Strand 10	A	567	574	anti-parallel
Strand 11	A	540	546	parallel
Strand 12	A	473	480	parallel
Strand 13	A	486	494	anti-parallel
Strand 14	A	507	509	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	503	first strand
Strand 2	A	486	494	anti-parallel
Strand 3	A	473	480	anti-parallel
Strand 4	A	540	546	parallel
Strand 5	A	567	574	parallel
Strand 6	A	617	623	anti-parallel
Strand 7	A	600	604	anti-parallel
Strand 8	A	592	594	anti-parallel
Strand 9	A	307	315	anti-parallel
Strand 10	A	6	18	anti-parallel
Strand 11	A	581	583	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	63	66	anti-parallel
Strand 3	A	27	34	anti-parallel
Strand 4	A	84	95	anti-parallel
Strand 5	A	76	81	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	195	first strand
Strand 2	A	261	263	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	464	465	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	380	first strand
Strand 2	A	344	350	parallel
Strand 3	A	403	410	parallel
Strand 4	A	432	436	parallel

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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	133	142	anti-parallel
Strand 3	B	145	157	anti-parallel
Strand 4	B	162	175	anti-parallel
Strand 5	B	6	18	anti-parallel
Strand 6	B	307	315	anti-parallel
Strand 7	B	592	597	anti-parallel
Strand 8	B	600	604	anti-parallel
Strand 9	B	617	623	anti-parallel
Strand 10	B	567	574	anti-parallel
Strand 11	B	540	546	parallel
Strand 12	B	473	480	parallel
Strand 13	B	486	494	anti-parallel
Strand 14	B	507	509	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	503	first strand
Strand 2	B	486	494	anti-parallel
Strand 3	B	473	480	anti-parallel
Strand 4	B	540	546	parallel
Strand 5	B	567	574	parallel
Strand 6	B	617	623	anti-parallel
Strand 7	B	600	604	anti-parallel
Strand 8	B	592	597	anti-parallel
Strand 9	B	307	315	anti-parallel
Strand 10	B	6	18	anti-parallel
Strand 11	B	581	583	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	63	66	anti-parallel
Strand 3	B	27	34	anti-parallel
Strand 4	B	87	95	anti-parallel
Strand 5	B	76	78	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	257	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	201	207	anti-parallel
Strand 4	B	192	195	anti-parallel
Strand 5	B	261	263	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	322	first strand
Strand 2	B	464	466	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	380	first strand
Strand 2	B	344	350	parallel
Strand 3	B	405	410	parallel
Strand 4	B	432	436	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GQ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQ9