Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GQE entry

There are 2 chains in PDB entry 5GQE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	THR 436
B	ALA 501	THR 936

There are 39 helices in PDB entry 5GQE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	11	Right-handed alpha
Helix 2	AA2	A	21	25	Right-handed 310
Helix 3	AA3	A	27	38	Right-handed alpha
Helix 4	AA4	A	48	53	Right-handed alpha
Helix 5	AA5	A	61	74	Right-handed alpha
Helix 6	AA6	A	90	96	Right-handed alpha
Helix 7	AA7	A	97	117	Right-handed alpha
Helix 8	AA8	A	143	148	Right-handed 310
Helix 9	AA9	A	149	162	Right-handed alpha
Helix 10	AB1	A	179	196	Right-handed alpha
Helix 11	AB2	A	216	228	Right-handed alpha
Helix 12	AB3	A	243	256	Right-handed alpha
Helix 13	AB4	A	269	273	Right-handed 310
Helix 14	AB5	A	275	279	Right-handed 310
Helix 15	AB6	A	290	301	Right-handed alpha
Helix 16	AB7	A	326	330	Right-handed 310
Helix 17	AB8	A	345	349	Right-handed 310
Helix 18	AB9	A	385	388	Right-handed 310
Helix 19	AC1	A	411	413	Right-handed 310
Helix 20	AC2	B	504	511	Right-handed alpha
Helix 21	AC3	B	521	525	Right-handed 310
Helix 22	AC4	B	527	538	Right-handed alpha
Helix 23	AC5	B	548	553	Right-handed alpha
Helix 24	AC6	B	561	574	Right-handed alpha
Helix 25	AC7	B	590	595	Right-handed alpha
Helix 26	AC8	B	597	617	Right-handed alpha
Helix 27	AC9	B	643	648	Right-handed 310
Helix 28	AD1	B	649	662	Right-handed alpha
Helix 29	AD2	B	679	696	Right-handed alpha
Helix 30	AD3	B	717	727	Right-handed alpha
Helix 31	AD4	B	743	756	Right-handed alpha
Helix 32	AD5	B	769	773	Right-handed 310
Helix 33	AD6	B	775	779	Right-handed 310
Helix 34	AD7	B	790	802	Right-handed alpha
Helix 35	AD8	B	826	830	Right-handed 310
Helix 36	AD9	B	845	849	Right-handed 310
Helix 37	AE1	B	885	888	Right-handed 310
Helix 38	AE2	B	911	913	Right-handed 310
Helix 39	AE3	B	928	932	Right-handed 310

There are 11 sheets in PDB entry 5GQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	231	239	parallel
Strand 3	A	260	265	parallel
Strand 4	A	15	20	parallel
Strand 5	A	40	43	parallel
Strand 6	A	77	80	parallel
Strand 7	A	122	127	parallel
Strand 8	A	166	171	parallel
Strand 9	A	201	204	parallel
Strand 10	A	231	239	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	317	first strand
Strand 2	A	433	435	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	A	338	340	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	358	360	anti-parallel
Strand 3	A	364	368	anti-parallel
Strand 4	A	377	381	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	398	400	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	409	first strand
Strand 2	A	420	423	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	708	first strand
Strand 2	B	731	739	parallel
Strand 3	B	760	765	parallel
Strand 4	B	515	520	parallel
Strand 5	B	540	543	parallel
Strand 6	B	577	580	parallel
Strand 7	B	622	627	parallel
Strand 8	B	666	671	parallel
Strand 9	B	701	704	parallel
Strand 10	B	731	739	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	815	816	first strand
Strand 2	B	934	935	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	825	first strand
Strand 2	B	838	840	anti-parallel
Strand 3	B	918	923	anti-parallel
Strand 4	B	875	881	anti-parallel
Strand 5	B	864	868	anti-parallel
Strand 6	B	858	860	anti-parallel
Strand 7	B	851	852	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	835	836	first strand
Strand 2	B	875	881	anti-parallel
Strand 3	B	918	923	anti-parallel
Strand 4	B	906	909	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	890	892	first strand
Strand 2	B	898	900	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GQE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQE