Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GQF entry

There are 2 chains in PDB entry 5GQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 46ALA 627
B
 GLY 46ALA 627
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5GQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 79Right-handed alpha
Helix 2
AA2
A
80 82Right-handed 310
Helix 3
AA3
A
121 125Right-handed 310
Helix 4
AA4
A
134 136Right-handed 310
Helix 5
AA5
A
185 189Right-handed 310
Helix 6
AA6
A
263 273Right-handed alpha
Helix 7
AA7
A
302 307Right-handed alpha
Helix 8
AA8
A
316 324Right-handed alpha
Helix 9
AA9
A
404 408Right-handed 310
Helix 10
AB1
A
519 522Right-handed 310
Helix 11
AB2
A
549 553Right-handed 310
Helix 12
AB3
A
580 584Right-handed 310
Helix 13
AB4
B
72 79Right-handed alpha
Helix 14
AB5
B
80 82Right-handed 310
Helix 15
AB6
B
121 125Right-handed 310
Helix 16
AB7
B
134 136Right-handed 310
Helix 17
AB8
B
185 189Right-handed 310
Helix 18
AB9
B
263 273Right-handed alpha
Helix 19
AC1
B
302 307Right-handed alpha
Helix 20
AC2
B
316 324Right-handed alpha
Helix 21
AC3
B
404 408Right-handed 310
Helix 22
AC4
B
519 522Right-handed 310
Helix 23
AC5
B
549 553Right-handed 310
Helix 24
AC6
B
580 584Right-handed 310
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There are 14 sheets in PDB entry 5GQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
87 91parallel
Strand 3
A
114 119parallel
Strand 4
A
168 171parallel
Strand 5
A
223 230parallel
Strand 6
A
276 283parallel
Strand 7
A
325 331parallel
Strand 8
A
348 349parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
87 91parallel
Strand 3
A
114 119parallel
Strand 4
A
168 171parallel
Strand 5
A
223 230parallel
Strand 6
A
276 283parallel
Strand 7
A
325 331parallel
Strand 8
A
352 354parallel
Strand 9
A
393 395parallel
Strand 10
A
424 426parallel
Strand 11
A
449 451parallel
Strand 12
A
473 475parallel
Strand 13
A
496 499parallel
Strand 14
A
524 527parallel
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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
128 130parallel
Strand 3
A
174 177parallel
Strand 4
A
233 238parallel
Strand 5
A
286 291parallel
Strand 6
A
334 338parallel
Strand 7
A
357 359parallel
Strand 8
A
398 400parallel
Strand 9
A
429 431parallel
Strand 10
A
454 456parallel
Strand 11
A
478 481parallel
Strand 12
A
502 505parallel
Strand 13
A
530 532parallel
Strand 14
A
545 547parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 107first strand
Strand 2
A
153 166parallel
Strand 3
A
138 142anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 107first strand
Strand 2
A
153 166parallel
Strand 3
A
210 218parallel
Strand 4
A
249 255parallel
Strand 5
A
293 300parallel
Strand 6
A
343 346parallel
Strand 7
A
384 387parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 417first strand
Strand 2
A
438 440parallel
Strand 3
A
463 464parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 421first strand
Strand 2
A
445 446parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
87 91parallel
Strand 3
B
114 119parallel
Strand 4
B
168 171parallel
Strand 5
B
223 230parallel
Strand 6
B
276 283parallel
Strand 7
B
325 331parallel
Strand 8
B
348 349parallel
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There are 14 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
87 91parallel
Strand 3
B
114 119parallel
Strand 4
B
168 171parallel
Strand 5
B
223 230parallel
Strand 6
B
276 283parallel
Strand 7
B
325 331parallel
Strand 8
B
352 354parallel
Strand 9
B
393 395parallel
Strand 10
B
424 426parallel
Strand 11
B
449 451parallel
Strand 12
B
473 475parallel
Strand 13
B
496 499parallel
Strand 14
B
524 527parallel
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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
128 130parallel
Strand 3
B
174 177parallel
Strand 4
B
233 238parallel
Strand 5
B
286 291parallel
Strand 6
B
334 338parallel
Strand 7
B
357 359parallel
Strand 8
B
398 400parallel
Strand 9
B
429 431parallel
Strand 10
B
454 456parallel
Strand 11
B
478 481parallel
Strand 12
B
502 505parallel
Strand 13
B
530 532parallel
Strand 14
B
545 547parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 107first strand
Strand 2
B
153 166parallel
Strand 3
B
138 142anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 107first strand
Strand 2
B
153 166parallel
Strand 3
B
210 218parallel
Strand 4
B
249 255parallel
Strand 5
B
293 300parallel
Strand 6
B
343 346parallel
Strand 7
B
384 387parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 417first strand
Strand 2
B
438 440parallel
Strand 3
B
463 464parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 421first strand
Strand 2
B
445 446parallel
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