Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GQH entry

There are 3 chains in PDB entry 5GQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 106ASN 1076
B
 SER 2GLU 136
C
 SER 2GLU 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5GQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
108 128Right-handed alpha
Helix 2
AA2
A
129 139Right-handed alpha
Helix 3
AA3
A
148 162Right-handed alpha
Helix 4
AA4
A
166 176Right-handed alpha
Helix 5
AA5
A
181 188Right-handed alpha
Helix 6
AA6
A
207 220Right-handed alpha
Helix 7
AA7
A
230 237Right-handed alpha
Helix 8
AA8
A
242 247Right-handed alpha
Helix 9
AA9
A
254 262Right-handed alpha
Helix 10
AB1
A
270 287Right-handed alpha
Helix 11
AB2
A
289 298Right-handed alpha
Helix 12
AB3
A
300 321Right-handed alpha
Helix 13
AB4
A
348 374Right-handed alpha
Helix 14
AB5
A
380 385Right-handed alpha
Helix 15
AB6
A
392 413Right-handed alpha
Helix 16
AB7
A
426 438Right-handed alpha
Helix 17
AB8
A
456 468Right-handed alpha
Helix 18
AB9
A
531 539Right-handed alpha
Helix 19
AC1
A
545 554Right-handed alpha
Helix 20
AC2
A
558 570Right-handed alpha
Helix 21
AC3
A
577 581Right-handed 310
Helix 22
AC4
A
584 599Right-handed alpha
Helix 23
AC5
A
611 632Right-handed alpha
Helix 24
AC6
A
659 680Right-handed alpha
Helix 25
AC7
A
703 721Right-handed alpha
Helix 26
AC8
A
739 753Right-handed alpha
Helix 27
AC9
A
771 786Right-handed alpha
Helix 28
AD1
A
792 799Right-handed alpha
Helix 29
AD2
A
799 809Right-handed alpha
Helix 30
AD3
A
821 827Right-handed alpha
Helix 31
AD4
A
840 853Right-handed alpha
Helix 32
AD5
A
871 877Right-handed alpha
Helix 33
AD6
A
898 903Right-handed alpha
Helix 34
AD7
A
904 909Right-handed alpha
Helix 35
AD8
A
913 918Right-handed alpha
Helix 36
AD9
A
928 940Right-handed alpha
Helix 37
AE1
A
952 959Right-handed alpha
Helix 38
AE2
A
965 971Right-handed alpha
Helix 39
AE3
A
1029 1041Right-handed alpha
Helix 40
AE4
A
1044 1050Right-handed alpha
Helix 41
AE5
B
3 12Right-handed alpha
Helix 42
AE6
B
13 24Right-handed alpha
Helix 43
AE7
B
28 32Right-handed 310
Helix 44
AE8
B
33 58Right-handed alpha
Helix 45
AE9
B
64 80Right-handed alpha
Helix 46
AF1
B
94 112Right-handed alpha
Helix 47
AF2
B
116 131Right-handed alpha
Helix 48
AF3
B
132 135Right-handed 310
Helix 49
AF4
C
3 12Right-handed alpha
Helix 50
AF5
C
13 24Right-handed alpha
Helix 51
AF6
C
28 32Right-handed 310
Helix 52
AF7
C
33 58Right-handed alpha
Helix 53
AF8
C
64 80Right-handed alpha
Helix 54
AF9
C
94 112Right-handed alpha
Helix 55
AG1
C
116 131Right-handed alpha
Helix 56
AG2
C
132 135Right-handed 310
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There are 6 sheets in PDB entry 5GQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 418first strand
Strand 2
A
643 647parallel
Strand 3
A
653 656anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 513first strand
Strand 2
A
474 477anti-parallel
Strand 3
A
541 543parallel
Strand 4
A
446 449parallel
Strand 5
A
573 575parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 689first strand
Strand 2
A
865 867parallel
Strand 3
A
834 837parallel
Strand 4
A
728 736parallel
Strand 5
A
723 725anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 689first strand
Strand 2
A
865 867parallel
Strand 3
A
834 837parallel
Strand 4
A
728 736parallel
Strand 5
A
813 820parallel
Strand 6
A
759 766parallel
Strand 7
A
1022 1024parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
982 986first strand
Strand 2
A
994 999anti-parallel
Strand 3
A
1004 1006anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1012 1013first strand
Strand 2
A
1065 1067parallel
Strand 3
A
1071 1073anti-parallel
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