Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GQQ entry

There are 4 chains in PDB entry 5GQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 20LYS 197
B
 VAL 20LYS 197
C
 GLY 22VAL 191
D
 GLY 22PHE 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5GQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 75Right-handed alpha
Helix 2
AA2
A
112 117Right-handed alpha
Helix 3
AA3
A
147 165Right-handed alpha
Helix 4
AA4
B
57 74Right-handed alpha
Helix 5
AA5
B
112 117Right-handed alpha
Helix 6
AA6
B
147 165Right-handed alpha
Helix 7
AA7
C
26 36Right-handed alpha
Helix 8
AA8
C
45 52Right-handed alpha
Helix 9
AA9
C
61 73Right-handed alpha
Helix 10
AB1
C
81 103Right-handed alpha
Helix 11
AB2
C
111 122Right-handed alpha
Helix 12
AB3
C
129 139Right-handed alpha
Helix 13
AB4
C
147 169Right-handed alpha
Helix 14
AB5
C
180 188Right-handed alpha
Helix 15
AB6
D
26 36Right-handed alpha
Helix 16
AB7
D
45 52Right-handed alpha
Helix 17
AB8
D
61 73Right-handed alpha
Helix 18
AB9
D
81 103Right-handed alpha
Helix 19
AC1
D
111 123Right-handed alpha
Helix 20
AC2
D
127 139Right-handed alpha
Helix 21
AC3
D
147 169Right-handed alpha
Helix 22
AC4
D
180 187Right-handed alpha
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There are 5 sheets in PDB entry 5GQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
135 142anti-parallel
Strand 4
A
190 195anti-parallel
Strand 5
A
174 178anti-parallel
Strand 6
A
89 94anti-parallel
Strand 7
A
103 110anti-parallel
Strand 8
A
46 55anti-parallel
Strand 9
A
127 132anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
39 43anti-parallel
Strand 3
B
135 142anti-parallel
Strand 4
B
190 195anti-parallel
Strand 5
B
174 178anti-parallel
Strand 6
B
89 94anti-parallel
Strand 7
B
103 110anti-parallel
Strand 8
B
46 55anti-parallel
Strand 9
B
127 132anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
79 80anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
175 179first strand
Strand 2
D
175 179anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 44first strand
Strand 2
D
79 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il