Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GQR entry

There are 4 chains in PDB entry 5GQR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PHE 32	ASN 629
C	HIS 93	GLY 98
C	ASN 100	ASN 104
K	ASN 27	PRO 211

There are 30 helices in PDB entry 5GQR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	33	45	Right-handed alpha
Helix 2	AA2	B	66	71	Right-handed 310
Helix 3	AA3	B	123	128	Right-handed 310
Helix 4	AA4	B	146	152	Right-handed 310
Helix 5	AA5	B	171	176	Right-handed 310
Helix 6	AA6	B	194	200	Right-handed 310
Helix 7	AA7	B	218	224	Right-handed 310
Helix 8	AA8	B	242	248	Right-handed 310
Helix 9	AA9	B	266	272	Right-handed 310
Helix 10	AB1	B	290	296	Right-handed 310
Helix 11	AB2	B	314	320	Right-handed 310
Helix 12	AB3	B	338	343	Right-handed 310
Helix 13	AB4	B	410	416	Right-handed 310
Helix 14	AB5	B	436	440	Right-handed 310
Helix 15	AB6	B	458	463	Right-handed 310
Helix 16	AB7	B	482	488	Right-handed 310
Helix 17	AB8	B	531	535	Right-handed 310
Helix 18	AB9	B	553	559	Right-handed 310
Helix 19	AC1	B	577	583	Right-handed 310
Helix 20	AC2	B	603	608	Right-handed 310
Helix 21	AC3	B	609	613	Right-handed 310
Helix 22	AC4	K	28	39	Right-handed alpha
Helix 23	AC5	K	46	50	Right-handed 310
Helix 24	AC6	K	56	60	Right-handed 310
Helix 25	AC7	K	86	92	Right-handed 310
Helix 26	AC8	K	110	116	Right-handed 310
Helix 27	AC9	K	134	140	Right-handed 310
Helix 28	AD1	K	158	164	Right-handed 310
Helix 29	AD2	K	184	190	Right-handed 310
Helix 30	AD3	K	191	195	Right-handed 310

There are 13 sheets in PDB entry 5GQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	94	95	anti-parallel

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There are 23 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	83	87	anti-parallel
Strand 3	B	109	111	parallel
Strand 4	B	133	135	parallel
Strand 5	B	157	159	parallel
Strand 6	B	181	183	parallel
Strand 7	B	205	207	parallel
Strand 8	B	229	231	parallel
Strand 9	B	253	255	parallel
Strand 10	B	277	279	parallel
Strand 11	B	301	303	parallel
Strand 12	B	325	327	parallel
Strand 13	B	349	351	parallel
Strand 14	B	373	375	parallel
Strand 15	B	397	399	parallel
Strand 16	B	421	423	parallel
Strand 17	B	445	447	parallel
Strand 18	B	469	471	parallel
Strand 19	B	493	495	parallel
Strand 20	B	516	518	parallel
Strand 21	B	540	542	parallel
Strand 22	B	564	566	parallel
Strand 23	B	588	590	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	143	first strand
Strand 2	B	164	165	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	236	237	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	284	286	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	383	first strand
Strand 2	B	404	405	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	431	first strand
Strand 2	B	452	453	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	526	first strand
Strand 2	B	547	548	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	599	first strand
Strand 2	B	618	620	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	40	41	first strand
Strand 2	K	82	83	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	63	65	first strand
Strand 2	K	71	75	anti-parallel
Strand 3	K	97	99	parallel
Strand 4	K	121	123	parallel
Strand 5	K	145	147	parallel
Strand 6	K	169	171	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	106	107	first strand
Strand 2	K	128	129	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	179	180	first strand
Strand 2	K	201	202	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GQR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQR