Analysis of interatomic Contacts of Structural Units in PDB entry:
5GQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GQV entry

There is 1 chain in PDB entry 5GQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5PRO 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5GQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
56 59Right-handed 310
Helix 4
AA4
A
110 120Right-handed alpha
Helix 5
AA5
A
124 128Right-handed 310
Helix 6
AA6
A
160 162Right-handed 310
Helix 7
AA7
A
165 169Right-handed 310
Helix 8
AA8
A
225 229Right-handed 310
Helix 9
AA9
A
234 243Right-handed alpha
Helix 10
AB1
A
245 249Right-handed 310
Helix 11
AB2
A
293 309Right-handed alpha
Helix 12
AB3
A
323 327Right-handed 310
Helix 13
AB4
A
339 342Right-handed 310
Helix 14
AB5
A
343 357Right-handed alpha
Helix 15
AB6
A
390 394Right-handed alpha
Helix 16
AB7
A
408 426Right-handed alpha
Helix 17
AB8
A
435 441Right-handed alpha
Helix 18
AB9
A
461 479Right-handed alpha
Helix 19
AC1
A
498 502Right-handed 310
Helix 20
AC2
A
511 524Right-handed alpha
Helix 21
AC3
A
525 531Right-handed 310
Helix 22
AC4
A
532 538Right-handed alpha
Helix 23
AC5
A
538 543Right-handed alpha
Helix 24
AC6
A
544 546Right-handed 310
Helix 25
AC7
A
553 558Right-handed 310
Helix 26
AC8
A
563 568Right-handed alpha
Helix 27
AC9
A
571 589Right-handed alpha
Helix 28
AD1
A
598 602Right-handed 310
Helix 29
AD2
A
614 619Right-handed 310
Helix 30
AD3
A
620 640Right-handed alpha
Helix 31
AD4
A
641 644Right-handed 310
Helix 32
AD5
A
649 651Right-handed 310
Helix 33
AD6
A
660 663Right-handed 310
Helix 34
AD7
A
674 677Right-handed 310
Helix 35
AD8
A
711 715Right-handed 310
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There are 12 sheets in PDB entry 5GQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 32first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
72 78anti-parallel
Strand 4
A
65 66anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
50 55anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
94 99anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 136first strand
Strand 2
A
139 147anti-parallel
Strand 3
A
177 183anti-parallel
Strand 4
A
171 173anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
190 196anti-parallel
Strand 3
A
202 205anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
190 196anti-parallel
Strand 3
A
221 222anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 256first strand
Strand 2
A
312 315parallel
Strand 3
A
360 365parallel
Strand 4
A
430 433parallel
Strand 5
A
483 486parallel
Strand 6
A
508 510parallel
Strand 7
A
548 552parallel
Strand 8
A
592 596parallel
Strand 9
A
252 256parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
289 291anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
275 277anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
333 337anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
401 402anti-parallel
Strand 3
A
395 396anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 657first strand
Strand 2
A
665 670anti-parallel
Strand 3
A
679 684anti-parallel
Strand 4
A
747 754anti-parallel
Strand 5
A
702 708anti-parallel
Strand 6
A
724 726anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
690 697first strand
Strand 2
A
735 743anti-parallel
Strand 3
A
728 732anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il