Analysis of interatomic Contacts of Structural Units in PDB entry:
5GR8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GR8 entry

There are 4 chains in PDB entry 5GR8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 29	PRO 738
D	LEU 29	PRO 738
J	LYS 7	ASN 23
P	GLN 8	ASN 23

There are 54 helices in PDB entry 5GR8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	41	Right-handed alpha
Helix 2	AA2	A	47	54	Right-handed alpha
Helix 3	AA3	A	92	98	Right-handed 310
Helix 4	AA4	A	116	122	Right-handed 310
Helix 5	AA5	A	142	146	Right-handed 310
Helix 6	AA6	A	164	170	Right-handed 310
Helix 7	AA7	A	188	194	Right-handed 310
Helix 8	AA8	A	212	218	Right-handed 310
Helix 9	AA9	A	236	242	Right-handed 310
Helix 10	AB1	A	284	290	Right-handed 310
Helix 11	AB2	A	308	314	Right-handed 310
Helix 12	AB3	A	332	338	Right-handed 310
Helix 13	AB4	A	356	362	Right-handed 310
Helix 14	AB5	A	380	385	Right-handed alpha
Helix 15	AB6	A	404	410	Right-handed 310
Helix 16	AB7	A	476	482	Right-handed alpha
Helix 17	AB8	A	523	529	Right-handed 310
Helix 18	AB9	A	547	553	Right-handed 310
Helix 19	AC1	A	571	577	Right-handed 310
Helix 20	AC2	A	595	601	Right-handed 310
Helix 21	AC3	A	621	625	Right-handed 310
Helix 22	AC4	A	643	648	Right-handed 310
Helix 23	AC5	A	668	674	Right-handed 310
Helix 24	AC6	A	691	697	Right-handed 310
Helix 25	AC7	A	719	725	Right-handed alpha
Helix 26	AC8	A	726	730	Right-handed 310
Helix 27	AC9	D	30	41	Right-handed alpha
Helix 28	AD1	D	47	54	Right-handed alpha
Helix 29	AD2	D	92	98	Right-handed 310
Helix 30	AD3	D	116	122	Right-handed 310
Helix 31	AD4	D	142	146	Right-handed 310
Helix 32	AD5	D	164	170	Right-handed 310
Helix 33	AD6	D	188	194	Right-handed 310
Helix 34	AD7	D	212	218	Right-handed 310
Helix 35	AD8	D	236	242	Right-handed 310
Helix 36	AD9	D	284	290	Right-handed 310
Helix 37	AE1	D	308	314	Right-handed 310
Helix 38	AE2	D	332	338	Right-handed 310
Helix 39	AE3	D	356	362	Right-handed 310
Helix 40	AE4	D	380	385	Right-handed alpha
Helix 41	AE5	D	404	410	Right-handed 310
Helix 42	AE6	D	430	435	Right-handed 310
Helix 43	AE7	D	476	482	Right-handed alpha
Helix 44	AE8	D	523	529	Right-handed 310
Helix 45	AE9	D	547	553	Right-handed 310
Helix 46	AF1	D	571	577	Right-handed 310
Helix 47	AF2	D	595	601	Right-handed 310
Helix 48	AF3	D	621	625	Right-handed 310
Helix 49	AF4	D	643	649	Right-handed 310
Helix 50	AF5	D	668	674	Right-handed 310
Helix 51	AF6	D	691	697	Right-handed 310
Helix 52	AF7	D	715	717	Right-handed 310
Helix 53	AF8	D	718	725	Right-handed alpha
Helix 54	AF9	D	726	730	Right-handed 310

There are 14 sheets in PDB entry 5GR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	88	89	anti-parallel
Strand 3	A	110	111	parallel

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There are 28 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	71	first strand
Strand 2	A	77	81	anti-parallel
Strand 3	A	103	105	parallel
Strand 4	A	127	129	parallel
Strand 5	A	151	153	parallel
Strand 6	A	175	177	parallel
Strand 7	A	199	201	parallel
Strand 8	A	223	225	parallel
Strand 9	A	247	249	parallel
Strand 10	A	271	273	parallel
Strand 11	A	295	297	parallel
Strand 12	A	319	321	parallel
Strand 13	A	343	345	parallel
Strand 14	A	367	369	parallel
Strand 15	A	391	393	parallel
Strand 16	A	415	417	parallel
Strand 17	A	439	441	parallel
Strand 18	A	463	465	parallel
Strand 19	A	487	489	parallel
Strand 20	A	510	512	parallel
Strand 21	A	534	536	parallel
Strand 22	A	558	560	parallel
Strand 23	A	582	584	parallel
Strand 24	A	606	608	parallel
Strand 25	A	630	632	parallel
Strand 26	A	656	657	parallel
Strand 27	A	679	681	parallel
Strand 28	A	702	704	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	158	161	parallel
Strand 3	A	182	185	parallel
Strand 4	A	206	210	parallel
Strand 5	A	230	232	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	326	327	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	374	378	parallel
Strand 3	A	398	402	parallel
Strand 4	A	422	426	parallel
Strand 5	A	446	448	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	473	first strand
Strand 2	A	494	497	parallel
Strand 3	A	517	521	parallel
Strand 4	A	541	544	parallel
Strand 5	A	565	568	parallel
Strand 6	A	589	590	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	665	first strand
Strand 2	A	686	687	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	88	90	anti-parallel
Strand 3	D	110	114	parallel
Strand 4	D	134	136	parallel

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There are 28 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	77	81	anti-parallel
Strand 3	D	103	105	parallel
Strand 4	D	127	129	parallel
Strand 5	D	151	153	parallel
Strand 6	D	175	177	parallel
Strand 7	D	199	201	parallel
Strand 8	D	223	225	parallel
Strand 9	D	247	249	parallel
Strand 10	D	271	273	parallel
Strand 11	D	295	297	parallel
Strand 12	D	319	321	parallel
Strand 13	D	343	345	parallel
Strand 14	D	367	369	parallel
Strand 15	D	391	393	parallel
Strand 16	D	415	417	parallel
Strand 17	D	439	441	parallel
Strand 18	D	463	465	parallel
Strand 19	D	487	489	parallel
Strand 20	D	510	512	parallel
Strand 21	D	534	536	parallel
Strand 22	D	558	560	parallel
Strand 23	D	582	584	parallel
Strand 24	D	606	608	parallel
Strand 25	D	630	632	parallel
Strand 26	D	656	657	parallel
Strand 27	D	679	681	parallel
Strand 28	D	702	704	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	182	183	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	353	first strand
Strand 2	D	374	375	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	472	473	first strand
Strand 2	D	494	497	parallel
Strand 3	D	517	518	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	567	568	first strand
Strand 2	D	589	592	parallel
Strand 3	D	613	614	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	712	713	first strand
Strand 2	D	735	736	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GR8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GR8