Analysis of interatomic Contacts of Structural Units in PDB entry:
5GRR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GRR entry

There is 1 chain in PDB entry 5GRR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 219ARG 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5GRR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
249 257Right-handed 310
Helix 2
AA2
A
265 269Right-handed 310
Helix 3
AA3
A
284 293Right-handed alpha
Helix 4
AA4
A
305 309Right-handed 310
Helix 5
AA5
A
311 319Right-handed alpha
Helix 6
AA6
A
340 342Right-handed 310
Helix 7
AA7
A
365 371Right-handed 310
Helix 8
AA8
A
372 380Right-handed alpha
Helix 9
AA9
A
398 403Right-handed 310
Helix 10
AB1
A
404 408Right-handed 310
Helix 11
AB2
A
418 422Right-handed 310
Helix 12
AB3
A
423 451Right-handed alpha
Helix 13
AB4
A
472 474Right-handed 310
Helix 14
AB5
A
486 491Right-handed alpha
Helix 15
AB6
A
500 503Right-handed 310
Helix 16
AB7
A
517 526Right-handed alpha
Helix 17
AB8
A
530 534Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5GRR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
528 529anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
494 498anti-parallel
Strand 3
A
457 464anti-parallel
Strand 4
A
238 245parallel
Strand 5
A
385 390parallel
Strand 6
A
322 327parallel
Strand 7
A
344 346parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
513 514parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
476 477anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il