Analysis of interatomic Contacts of Structural Units in PDB entry:
5GRS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GRS entry

There are 9 chains in PDB entry 5GRS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 567	SER 941
I	GLU 992	PHE 1053
B	GLY 567	SER 941
J	GLU 992	PHE 1053
C	GLY 567	SER 941
K	GLU 992	PHE 1053
D	GLY 567	SER 941
L	GLU 992	PHE 1053
E	SER 694	SER 694

There are 62 helices in PDB entry 5GRS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	579	584	Right-handed alpha
Helix 2	AA2	A	634	638	Right-handed 310
Helix 3	AA3	A	781	785	Right-handed 310
Helix 4	AA4	A	842	846	Right-handed 310
Helix 5	AA5	A	894	899	Right-handed alpha
Helix 6	AA6	A	903	907	Right-handed 310
Helix 7	AA7	B	579	584	Right-handed alpha
Helix 8	AA8	B	634	638	Right-handed 310
Helix 9	AA9	B	781	785	Right-handed 310
Helix 10	AB1	B	842	846	Right-handed 310
Helix 11	AB2	B	894	899	Right-handed alpha
Helix 12	AB3	B	903	907	Right-handed 310
Helix 13	AB4	C	579	584	Right-handed alpha
Helix 14	AB5	C	634	638	Right-handed 310
Helix 15	AB6	C	781	785	Right-handed 310
Helix 16	AB7	C	842	846	Right-handed 310
Helix 17	AB8	C	894	899	Right-handed alpha
Helix 18	AB9	C	903	907	Right-handed 310
Helix 19	AC1	D	579	584	Right-handed alpha
Helix 20	AC2	D	634	638	Right-handed 310
Helix 21	AC3	D	781	785	Right-handed 310
Helix 22	AC4	D	842	846	Right-handed 310
Helix 23	AC5	D	894	899	Right-handed alpha
Helix 24	AC6	D	903	907	Right-handed 310
Helix 25	AC7	E	695	718	Right-handed alpha
Helix 26	AC8	E	721	732	Right-handed alpha
Helix 27	AC9	E	737	750	Right-handed alpha
Helix 28	AD1	E	751	753	Right-handed 310
Helix 29	AD2	E	754	774	Right-handed alpha
Helix 30	AD3	E	786	803	Right-handed alpha
Helix 31	AD4	E	806	816	Right-handed alpha
Helix 32	AD5	E	827	842	Right-handed alpha
Helix 33	AD6	E	851	864	Right-handed alpha
Helix 34	AD7	E	872	888	Right-handed alpha
Helix 35	AD8	F	695	718	Right-handed alpha
Helix 36	AD9	F	722	732	Right-handed alpha
Helix 37	AE1	F	736	750	Right-handed alpha
Helix 38	AE2	F	753	774	Right-handed alpha
Helix 39	AE3	F	786	803	Right-handed alpha
Helix 40	AE4	F	807	816	Right-handed alpha
Helix 41	AE5	F	827	846	Right-handed alpha
Helix 42	AE6	F	853	865	Right-handed alpha
Helix 43	AE7	F	873	888	Right-handed alpha
Helix 44	AE8	G	696	718	Right-handed alpha
Helix 45	AE9	G	721	732	Right-handed alpha
Helix 46	AF1	G	737	750	Right-handed alpha
Helix 47	AF2	G	751	753	Right-handed 310
Helix 48	AF3	G	754	774	Right-handed alpha
Helix 49	AF4	G	786	803	Right-handed alpha
Helix 50	AF5	G	806	816	Right-handed alpha
Helix 51	AF6	G	827	842	Right-handed alpha
Helix 52	AF7	G	851	863	Right-handed alpha
Helix 53	AF8	G	872	887	Right-handed alpha
Helix 54	AF9	H	695	718	Right-handed alpha
Helix 55	AG1	H	722	732	Right-handed alpha
Helix 56	AG2	H	736	750	Right-handed alpha
Helix 57	AG3	H	753	774	Right-handed alpha
Helix 58	AG4	H	786	803	Right-handed alpha
Helix 59	AG5	H	807	816	Right-handed alpha
Helix 60	AG6	H	827	846	Right-handed alpha
Helix 61	AG7	H	853	866	Right-handed alpha
Helix 62	AG8	H	872	888	Right-handed alpha

There are 32 sheets in PDB entry 5GRS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	588	first strand
Strand 2	I	1042	1047	anti-parallel
Strand 3	I	1034	1039	anti-parallel
Strand 4	I	1027	1029	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	603	first strand
Strand 2	A	609	614	anti-parallel
Strand 3	A	619	623	anti-parallel
Strand 4	A	629	633	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	644	647	first strand
Strand 2	A	653	657	anti-parallel
Strand 3	A	661	666	anti-parallel
Strand 4	A	674	677	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	689	first strand
Strand 2	A	701	709	anti-parallel
Strand 3	A	713	721	anti-parallel
Strand 4	A	729	735	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	747	first strand
Strand 2	A	752	757	anti-parallel
Strand 3	A	763	769	anti-parallel
Strand 4	A	772	777	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	795	first strand
Strand 2	A	800	803	anti-parallel
Strand 3	A	810	812	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	834	838	first strand
Strand 2	A	851	857	anti-parallel
Strand 3	A	864	869	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	919	922	first strand
Strand 2	A	929	938	anti-parallel
Strand 3	I	993	1002	anti-parallel
Strand 4	I	1007	1014	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	588	first strand
Strand 2	J	1042	1047	anti-parallel
Strand 3	J	1034	1039	anti-parallel
Strand 4	J	1027	1029	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	603	first strand
Strand 2	B	609	614	anti-parallel
Strand 3	B	619	623	anti-parallel
Strand 4	B	629	633	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	644	647	first strand
Strand 2	B	653	657	anti-parallel
Strand 3	B	661	666	anti-parallel
Strand 4	B	674	677	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	689	first strand
Strand 2	B	701	709	anti-parallel
Strand 3	B	713	721	anti-parallel
Strand 4	B	729	735	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	743	747	first strand
Strand 2	B	752	757	anti-parallel
Strand 3	B	763	769	anti-parallel
Strand 4	B	772	777	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	792	795	first strand
Strand 2	B	800	803	anti-parallel
Strand 3	B	810	812	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	834	838	first strand
Strand 2	B	851	857	anti-parallel
Strand 3	B	864	869	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	919	922	first strand
Strand 2	B	929	938	anti-parallel
Strand 3	J	993	1002	anti-parallel
Strand 4	J	1007	1014	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	588	first strand
Strand 2	K	1042	1047	anti-parallel
Strand 3	K	1034	1039	anti-parallel
Strand 4	K	1027	1029	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	603	first strand
Strand 2	C	609	614	anti-parallel
Strand 3	C	619	623	anti-parallel
Strand 4	C	629	633	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	644	647	first strand
Strand 2	C	653	657	anti-parallel
Strand 3	C	661	666	anti-parallel
Strand 4	C	674	677	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	689	first strand
Strand 2	C	701	709	anti-parallel
Strand 3	C	713	721	anti-parallel
Strand 4	C	729	735	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	743	747	first strand
Strand 2	C	752	757	anti-parallel
Strand 3	C	763	769	anti-parallel
Strand 4	C	772	777	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	795	first strand
Strand 2	C	800	803	anti-parallel
Strand 3	C	810	812	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	834	838	first strand
Strand 2	C	851	857	anti-parallel
Strand 3	C	864	869	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	919	922	first strand
Strand 2	C	929	938	anti-parallel
Strand 3	K	993	1002	anti-parallel
Strand 4	K	1007	1014	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	586	588	first strand
Strand 2	L	1042	1047	anti-parallel
Strand 3	L	1034	1039	anti-parallel
Strand 4	L	1027	1029	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	598	603	first strand
Strand 2	D	609	614	anti-parallel
Strand 3	D	619	623	anti-parallel
Strand 4	D	629	633	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	644	647	first strand
Strand 2	D	653	657	anti-parallel
Strand 3	D	661	666	anti-parallel
Strand 4	D	674	677	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	686	689	first strand
Strand 2	D	701	709	anti-parallel
Strand 3	D	713	721	anti-parallel
Strand 4	D	729	735	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	743	747	first strand
Strand 2	D	752	757	anti-parallel
Strand 3	D	763	769	anti-parallel
Strand 4	D	772	777	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	792	795	first strand
Strand 2	D	800	803	anti-parallel
Strand 3	D	810	812	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	834	838	first strand
Strand 2	D	851	857	anti-parallel
Strand 3	D	864	869	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	919	922	first strand
Strand 2	D	929	938	anti-parallel
Strand 3	L	993	1002	anti-parallel
Strand 4	L	1007	1014	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GRS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GRS