Analysis of interatomic Contacts of Structural Units in PDB entry:
5GRU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GRU entry

There are 3 chains in PDB entry 5GRU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7THR 366
H
 VAL 2LYS 241
L
 GLN 1LYS 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5GRU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
42 54Right-handed alpha
Helix 3
AA3
A
64 73Right-handed alpha
Helix 4
AA4
A
82 87Right-handed alpha
Helix 5
AA5
A
90 96Right-handed alpha
Helix 6
AA6
A
128 130Right-handed 310
Helix 7
AA7
A
131 141Right-handed alpha
Helix 8
AA8
A
153 164Right-handed alpha
Helix 9
AA9
A
185 201Right-handed alpha
Helix 10
AB1
A
209 219Right-handed alpha
Helix 11
AB2
A
228 230Right-handed 310
Helix 12
AB3
A
231 239Right-handed alpha
Helix 13
AB4
A
272 283Right-handed alpha
Helix 14
AB5
A
286 297Right-handed alpha
Helix 15
AB6
A
304 312Right-handed alpha
Helix 16
AB7
A
314 327Right-handed alpha
Helix 17
AB8
A
335 353Right-handed alpha
Helix 18
AB9
A
356 366Right-handed alpha
Helix 19
AC1
H
28 31Right-handed 310
Helix 20
AC2
H
74 76Right-handed 310
Helix 21
AC3
H
87 91Right-handed 310
Helix 22
AC4
H
213 217Right-handed 310
Helix 23
AC5
L
87 91Right-handed 310
Helix 24
AC6
L
118 122Right-handed 310
Helix 25
AC7
L
200 204Right-handed 310
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There are 17 sheets in PDB entry 5GRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
8 10parallel
Strand 3
A
59 63parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
106 111anti-parallel
Strand 6
A
301 302anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
8 10parallel
Strand 3
A
59 63parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
328 329parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
102 103anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
222 227parallel
Strand 3
A
114 118anti-parallel
Strand 4
A
242 245anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
175 177anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
123 127parallel
Strand 3
H
92 103anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
123 127parallel
Strand 3
H
92 103anti-parallel
Strand 4
H
111 119anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
138 141first strand
Strand 2
H
153 159anti-parallel
Strand 3
H
204 209anti-parallel
Strand 4
H
196 201anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
187 188first strand
Strand 2
H
178 183anti-parallel
Strand 3
H
167 172anti-parallel
Strand 4
H
219 224anti-parallel
Strand 5
H
231 232anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
187 188first strand
Strand 2
H
178 183anti-parallel
Strand 3
H
167 172anti-parallel
Strand 4
H
219 224anti-parallel
Strand 5
H
236 237anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
3 7first strand
Strand 2
L
18 25anti-parallel
Strand 3
L
78 83anti-parallel
Strand 4
L
68 73anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 12first strand
Strand 2
L
110 114parallel
Strand 3
L
92 99anti-parallel
Strand 4
L
34 40anti-parallel
Strand 5
L
46 53anti-parallel
Strand 6
L
58 60anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 12first strand
Strand 2
L
110 114parallel
Strand 3
L
92 99anti-parallel
Strand 4
L
103 106anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
125 128first strand
Strand 2
L
140 146anti-parallel
Strand 3
L
191 196anti-parallel
Strand 4
L
183 188anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
131 133first strand
Strand 2
L
223 226parallel
Strand 3
L
205 211anti-parallel
Strand 4
L
154 159anti-parallel
Strand 5
L
166 170anti-parallel
Strand 6
L
174 175anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
131 133first strand
Strand 2
L
223 226parallel
Strand 3
L
205 211anti-parallel
Strand 4
L
218 219anti-parallel
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