Analysis of interatomic Contacts of Structural Units in PDB entry:
5GRW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GRW entry

There are 2 chains in PDB entry 5GRW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1GLU 229
B
 VAL 1GLU 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5GRW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 31Right-handed 310
Helix 2
AA2
A
73 75Right-handed 310
Helix 3
AA3
A
86 90Right-handed 310
Helix 4
AA4
A
100 103Right-handed 310
Helix 5
AA5
A
152 155Right-handed 310
Helix 6
AA6
A
203 207Right-handed 310
Helix 7
AA7
B
61 64Right-handed 310
Helix 8
AA8
B
86 90Right-handed 310
Helix 9
AA9
B
100 103Right-handed 310
Helix 10
AB1
B
152 155Right-handed 310
Helix 11
AB2
B
203 207Right-handed 310
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There are 12 sheets in PDB entry 5GRW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
112 116parallel
Strand 3
A
91 98anti-parallel
Strand 4
A
32 38anti-parallel
Strand 5
A
44 50anti-parallel
Strand 6
A
58 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
112 116parallel
Strand 3
A
91 98anti-parallel
Strand 4
A
105 108anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
142 148anti-parallel
Strand 3
A
194 199anti-parallel
Strand 4
A
186 191anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
226 228parallel
Strand 3
A
209 214anti-parallel
Strand 4
A
157 162anti-parallel
Strand 5
A
169 173anti-parallel
Strand 6
A
177 178anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
226 228parallel
Strand 3
A
209 214anti-parallel
Strand 4
A
221 222anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
17 24anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
112 116parallel
Strand 3
B
91 98anti-parallel
Strand 4
B
32 38anti-parallel
Strand 5
B
44 51anti-parallel
Strand 6
B
58 59anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
112 116parallel
Strand 3
B
91 98anti-parallel
Strand 4
B
105 108anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 130first strand
Strand 2
B
142 148anti-parallel
Strand 3
B
194 199anti-parallel
Strand 4
B
186 191anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
226 228parallel
Strand 3
B
209 214anti-parallel
Strand 4
B
157 162anti-parallel
Strand 5
B
169 173anti-parallel
Strand 6
B
177 178anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
226 228parallel
Strand 3
B
209 214anti-parallel
Strand 4
B
221 222anti-parallel
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