Analysis of interatomic Contacts of Structural Units in PDB entry:
5GRY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GRY entry

There are 2 chains in PDB entry 5GRY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	VAL 2	LYS 232
A	VAL 2	LYS 232

There are 12 helices in PDB entry 5GRY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	28	32	Right-handed 310
Helix 2	AA2	G	74	76	Right-handed 310
Helix 3	AA3	G	87	91	Right-handed 310
Helix 4	AA4	G	101	104	Right-handed 310
Helix 5	AA5	G	153	156	Right-handed 310
Helix 6	AA6	G	204	208	Right-handed 310
Helix 7	AA7	A	28	32	Right-handed 310
Helix 8	AA8	A	74	76	Right-handed 310
Helix 9	AA9	A	87	91	Right-handed 310
Helix 10	AB1	A	101	104	Right-handed 310
Helix 11	AB2	A	153	156	Right-handed 310
Helix 12	AB3	A	204	208	Right-handed 310

There are 12 sheets in PDB entry 5GRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	113	117	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	59	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	113	117	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	106	109	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	131	first strand
Strand 2	G	143	149	anti-parallel
Strand 3	G	195	200	anti-parallel
Strand 4	G	187	192	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	137	first strand
Strand 2	G	227	231	parallel
Strand 3	G	209	215	anti-parallel
Strand 4	G	158	163	anti-parallel
Strand 5	G	170	174	anti-parallel
Strand 6	G	178	179	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	137	first strand
Strand 2	G	227	231	parallel
Strand 3	G	209	215	anti-parallel
Strand 4	G	222	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	59	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	106	109	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	143	149	anti-parallel
Strand 3	A	195	200	anti-parallel
Strand 4	A	187	192	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	137	first strand
Strand 2	A	227	231	parallel
Strand 3	A	209	215	anti-parallel
Strand 4	A	158	163	anti-parallel
Strand 5	A	170	174	anti-parallel
Strand 6	A	178	179	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	137	first strand
Strand 2	A	227	231	parallel
Strand 3	A	209	215	anti-parallel
Strand 4	A	222	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GRY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GRY