Analysis of interatomic Contacts of Structural Units in PDB entry:
5GS0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GS0 entry

There are 10 chains in PDB entry 5GS0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 29	PHE 691
C	ASP 1	LYS 107
D	GLN 1	SER 122
B	THR 29	PHE 691
E	ASP 1	LYS 107
F	GLN 1	SER 122
X	GLN 1	VAL 114
Y	ASP 1	LYS 107
H	GLN 1	SER 116
L	ASP 1	GLU 105

There are 36 helices in PDB entry 5GS0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	72	Right-handed 310
Helix 2	AA2	A	92	97	Right-handed alpha
Helix 3	AA3	A	187	192	Right-handed alpha
Helix 4	AA4	A	193	195	Right-handed 310
Helix 5	AA5	A	234	246	Right-handed alpha
Helix 6	AA6	A	269	274	Right-handed 310
Helix 7	AA7	A	314	319	Right-handed 310
Helix 8	AA8	A	399	405	Right-handed 310
Helix 9	AA9	A	543	547	Right-handed 310
Helix 10	AB1	A	626	635	Right-handed alpha
Helix 11	AB2	A	650	664	Right-handed alpha
Helix 12	AB3	A	670	675	Right-handed alpha
Helix 13	AB4	C	26	30	Right-handed 310
Helix 14	AB5	C	78	82	Right-handed 310
Helix 15	AB6	D	90	94	Right-handed 310
Helix 16	AB7	B	67	72	Right-handed 310
Helix 17	AB8	B	92	98	Right-handed alpha
Helix 18	AB9	B	187	192	Right-handed alpha
Helix 19	AC1	B	193	195	Right-handed 310
Helix 20	AC2	B	234	245	Right-handed alpha
Helix 21	AC3	B	266	274	Right-handed 310
Helix 22	AC4	B	314	319	Right-handed 310
Helix 23	AC5	B	401	405	Right-handed 310
Helix 24	AC6	B	473	476	Right-handed 310
Helix 25	AC7	B	543	547	Right-handed 310
Helix 26	AC8	B	626	635	Right-handed alpha
Helix 27	AC9	B	650	664	Right-handed alpha
Helix 28	AD1	B	670	675	Right-handed alpha
Helix 29	AD2	B	680	684	Right-handed 310
Helix 30	AD3	B	687	691	Right-handed 310
Helix 31	AD4	E	26	30	Right-handed 310
Helix 32	AD5	F	90	94	Right-handed 310
Helix 33	AD6	X	61	65	Right-handed 310
Helix 34	AD7	X	87	91	Right-handed 310
Helix 35	AD8	H	62	65	Right-handed 310
Helix 36	AD9	H	87	91	Right-handed 310

There are 34 sheets in PDB entry 5GS0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 25 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	55	57	parallel
Strand 3	A	79	81	parallel
Strand 4	A	103	105	parallel
Strand 5	A	127	129	parallel
Strand 6	A	151	153	parallel
Strand 7	A	175	177	parallel
Strand 8	A	201	203	parallel
Strand 9	A	225	227	parallel
Strand 10	A	252	254	parallel
Strand 11	A	278	280	parallel
Strand 12	A	302	304	parallel
Strand 13	A	326	328	parallel
Strand 14	A	359	361	parallel
Strand 15	A	383	385	parallel
Strand 16	A	411	413	parallel
Strand 17	A	435	437	parallel
Strand 18	A	460	462	parallel
Strand 19	A	484	486	parallel
Strand 20	A	510	512	parallel
Strand 21	A	534	536	parallel
Strand 22	A	566	568	parallel
Strand 23	A	590	592	parallel
Strand 24	A	614	616	parallel
Strand 25	A	639	641	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	222	223	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	288	289	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	396	first strand
Strand 2	A	421	422	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	447	first strand
Strand 2	A	468	471	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	648	first strand
Strand 2	A	677	679	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	102	106	parallel
Strand 3	C	83	89	anti-parallel
Strand 4	C	33	37	anti-parallel
Strand 5	C	44	47	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	102	106	parallel
Strand 3	C	83	89	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	61	66	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	74	76	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	116	120	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	34	41	anti-parallel
Strand 5	D	47	55	anti-parallel
Strand 6	D	59	63	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	116	120	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	108	112	anti-parallel

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There are 26 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	34	36	anti-parallel
Strand 3	B	55	57	parallel
Strand 4	B	79	81	parallel
Strand 5	B	103	105	parallel
Strand 6	B	127	129	parallel
Strand 7	B	151	153	parallel
Strand 8	B	175	177	parallel
Strand 9	B	201	203	parallel
Strand 10	B	225	227	parallel
Strand 11	B	252	254	parallel
Strand 12	B	278	280	parallel
Strand 13	B	302	304	parallel
Strand 14	B	326	328	parallel
Strand 15	B	359	361	parallel
Strand 16	B	383	385	parallel
Strand 17	B	411	413	parallel
Strand 18	B	435	437	parallel
Strand 19	B	460	462	parallel
Strand 20	B	484	486	parallel
Strand 21	B	510	512	parallel
Strand 22	B	534	536	parallel
Strand 23	B	566	568	parallel
Strand 24	B	590	592	parallel
Strand 25	B	614	616	parallel
Strand 26	B	639	641	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	222	223	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	288	289	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	345	346	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	396	first strand
Strand 2	B	421	422	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	447	first strand
Strand 2	B	468	471	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	102	106	parallel
Strand 3	E	83	89	anti-parallel
Strand 4	E	33	37	anti-parallel
Strand 5	E	44	47	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	102	106	parallel
Strand 3	E	83	89	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	23	first strand
Strand 2	E	69	74	anti-parallel
Strand 3	E	61	63	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	81	86	anti-parallel
Strand 4	F	71	76	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	116	120	parallel
Strand 3	F	95	103	anti-parallel
Strand 4	F	34	41	anti-parallel
Strand 5	F	47	55	anti-parallel
Strand 6	F	59	63	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	116	120	parallel
Strand 3	F	95	103	anti-parallel
Strand 4	F	108	112	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	4	7	first strand
Strand 2	X	16	24	anti-parallel
Strand 3	X	78	86	anti-parallel
Strand 4	X	68	73	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	46	53	first strand
Strand 2	X	34	40	anti-parallel
Strand 3	X	92	99	anti-parallel
Strand 4	X	103	106	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	46	53	first strand
Strand 2	X	34	40	anti-parallel
Strand 3	X	92	99	anti-parallel
Strand 4	X	110	112	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	4	8	first strand
Strand 2	Y	19	25	anti-parallel
Strand 3	Y	70	75	anti-parallel
Strand 4	Y	62	65	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	53	54	first strand
Strand 2	Y	44	49	anti-parallel
Strand 3	Y	33	38	anti-parallel
Strand 4	Y	85	90	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	46	53	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	92	99	anti-parallel
Strand 5	H	103	106	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	46	53	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	92	99	anti-parallel
Strand 5	H	111	112	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	22	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	44	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel
Strand 5	L	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GS0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GS0