Analysis of interatomic Contacts of Structural Units in PDB entry:
5GS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GS6 entry

There are 2 chains in PDB entry 5GS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1ALA 352
B
 HIS -4ALA 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5GS6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 52Right-handed alpha
Helix 2
AA2
A
61 82Right-handed alpha
Helix 3
AA3
A
144 146Right-handed 310
Helix 4
AA4
A
180 183Right-handed 310
Helix 5
AA5
A
226 230Right-handed 310
Helix 6
AA6
A
244 248Right-handed 310
Helix 7
AA7
A
252 256Right-handed 310
Helix 8
AA8
A
341 345Right-handed 310
Helix 9
AA9
B
38 52Right-handed alpha
Helix 10
AB1
B
61 82Right-handed alpha
Helix 11
AB2
B
144 146Right-handed 310
Helix 12
AB3
B
180 183Right-handed 310
Helix 13
AB4
B
226 230Right-handed 310
Helix 14
AB5
B
237 241Right-handed 310
Helix 15
AB6
B
244 248Right-handed 310
Helix 16
AB7
B
252 256Right-handed 310
Helix 17
AB8
B
341 345Right-handed 310
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There are 8 sheets in PDB entry 5GS6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
1 7anti-parallel
Strand 3
A
2 7anti-parallel
Strand 4
A
12 22anti-parallel
Strand 5
B
18 22anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
166 171parallel
Strand 3
A
153 160anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
132 135parallel
Strand 3
A
56 57parallel
Strand 4
A
148 149parallel
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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
321 325anti-parallel
Strand 3
A
273 277anti-parallel
Strand 4
A
210 217anti-parallel
Strand 5
A
200 206anti-parallel
Strand 6
A
192 196anti-parallel
Strand 7
A
185 189anti-parallel
Strand 8
B
185 189anti-parallel
Strand 9
B
192 196anti-parallel
Strand 10
B
200 206anti-parallel
Strand 11
B
210 217anti-parallel
Strand 12
B
273 277anti-parallel
Strand 13
B
321 325anti-parallel
Strand 14
B
328 331anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
310 313parallel
Strand 3
A
335 337anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
167 171parallel
Strand 3
B
153 160anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
132 135parallel
Strand 3
B
56 57parallel
Strand 4
B
148 149parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 287first strand
Strand 2
B
310 313parallel
Strand 3
B
335 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il