Analysis of interatomic Contacts of Structural Units in PDB entry:
5GS7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GS7 entry

There are 2 chains in PDB entry 5GS7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASN 324
B
 ALA 2ASN 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5GS7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 109Right-handed alpha
Helix 2
AA2
A
111 120Right-handed alpha
Helix 3
AA3
A
173 181Right-handed alpha
Helix 4
AA4
A
182 185Right-handed 310
Helix 5
AA5
A
208 212Right-handed 310
Helix 6
AA6
A
219 233Right-handed alpha
Helix 7
AA7
A
239 253Right-handed alpha
Helix 8
AA8
A
300 302Right-handed 310
Helix 9
AA9
B
97 109Right-handed alpha
Helix 10
AB1
B
111 120Right-handed alpha
Helix 11
AB2
B
173 182Right-handed alpha
Helix 12
AB3
B
183 185Right-handed 310
Helix 13
AB4
B
208 212Right-handed 310
Helix 14
AB5
B
219 233Right-handed alpha
Helix 15
AB6
B
239 254Right-handed alpha
Helix 16
AB7
B
300 302Right-handed 310
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There are 8 sheets in PDB entry 5GS7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
3 8anti-parallel
Strand 3
A
12 20anti-parallel
Strand 4
A
270 278anti-parallel
Strand 5
A
283 288anti-parallel
Strand 6
A
291 298anti-parallel
Strand 7
B
321 322parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 162first strand
Strand 2
A
148 154anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
74 79anti-parallel
Strand 5
A
64 69anti-parallel
Strand 6
A
51 56anti-parallel
Strand 7
A
26 31anti-parallel
Strand 8
A
310 313anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
122 124parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
267 268anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
B
291 298parallel
Strand 3
B
283 288anti-parallel
Strand 4
B
270 278anti-parallel
Strand 5
B
12 20anti-parallel
Strand 6
B
3 8anti-parallel
Strand 7
B
167 168anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 162first strand
Strand 2
B
148 154anti-parallel
Strand 3
B
138 143anti-parallel
Strand 4
B
74 79anti-parallel
Strand 5
B
64 69anti-parallel
Strand 6
B
51 56anti-parallel
Strand 7
B
26 31anti-parallel
Strand 8
B
310 313anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
122 124parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
267 268anti-parallel
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