Analysis of interatomic Contacts of Structural Units in PDB entry:
5GSC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GSC entry

There are 2 chains in PDB entry 5GSC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8ALA 358
B
 ASP 7GLY 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5GSC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
66 81Right-handed alpha
Helix 3
AA3
A
89 98Right-handed 310
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
106 112Right-handed alpha
Helix 6
AA6
A
128 139Right-handed alpha
Helix 7
AA7
A
152 167Right-handed alpha
Helix 8
AA8
A
170 178Right-handed alpha
Helix 9
AA9
A
178 183Right-handed alpha
Helix 10
AB1
A
193 200Right-handed 310
Helix 11
AB2
A
218 223Right-handed alpha
Helix 12
AB3
A
228 241Right-handed alpha
Helix 13
AB4
A
245 255Right-handed alpha
Helix 14
AB5
A
279 287Right-handed alpha
Helix 15
AB6
A
288 294Right-handed alpha
Helix 16
AB7
A
327 329Right-handed 310
Helix 17
AB8
A
342 358Right-handed alpha
Helix 18
AB9
B
9 24Right-handed alpha
Helix 19
AC1
B
66 81Right-handed alpha
Helix 20
AC2
B
89 93Right-handed 310
Helix 21
AC3
B
94 98Right-handed 310
Helix 22
AC4
B
100 104Right-handed 310
Helix 23
AC5
B
106 112Right-handed alpha
Helix 24
AC6
B
128 139Right-handed alpha
Helix 25
AC7
B
152 167Right-handed alpha
Helix 26
AC8
B
170 178Right-handed alpha
Helix 27
AC9
B
178 183Right-handed alpha
Helix 28
AD1
B
193 200Right-handed 310
Helix 29
AD2
B
218 223Right-handed alpha
Helix 30
AD3
B
228 241Right-handed alpha
Helix 31
AD4
B
245 255Right-handed alpha
Helix 32
AD5
B
279 287Right-handed alpha
Helix 33
AD6
B
288 294Right-handed alpha
Helix 34
AD7
B
327 329Right-handed 310
Helix 35
AD8
B
342 358Right-handed alpha
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There are 8 sheets in PDB entry 5GSC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
38 48anti-parallel
Strand 3
A
28 35anti-parallel
Strand 4
A
331 337anti-parallel
Strand 5
A
320 326anti-parallel
Strand 6
A
308 315anti-parallel
Strand 7
A
272 275anti-parallel
Strand 8
A
265 267anti-parallel
Strand 9
A
260 262anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
226 227anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
296 297anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
210 211anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
38 48anti-parallel
Strand 3
B
28 35anti-parallel
Strand 4
B
331 337anti-parallel
Strand 5
B
320 326anti-parallel
Strand 6
B
307 315anti-parallel
Strand 7
B
272 276anti-parallel
Strand 8
B
265 267anti-parallel
Strand 9
B
260 262anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
226 227anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
296 297anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
B
210 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il