Analysis of interatomic Contacts of Structural Units in PDB entry:
5GSL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GSL entry

There are 2 chains in PDB entry 5GSL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 4	PHE 778
B	MET 4	PHE 778

There are 58 helices in PDB entry 5GSL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	33	35	Right-handed 310
Helix 3	AA3	A	36	47	Right-handed alpha
Helix 4	AA4	A	57	62	Right-handed alpha
Helix 5	AA5	A	75	78	Right-handed 310
Helix 6	AA6	A	79	90	Right-handed alpha
Helix 7	AA7	A	106	111	Right-handed 310
Helix 8	AA8	A	112	118	Right-handed alpha
Helix 9	AA9	A	144	165	Right-handed alpha
Helix 10	AB1	A	166	170	Right-handed 310
Helix 11	AB2	A	207	215	Right-handed alpha
Helix 12	AB3	A	219	224	Right-handed alpha
Helix 13	AB4	A	230	234	Right-handed 310
Helix 14	AB5	A	243	271	Right-handed alpha
Helix 15	AB6	A	282	285	Right-handed 310
Helix 16	AB7	A	286	287	Right-handed 310
Helix 17	AB8	A	288	300	Right-handed alpha
Helix 18	AB9	A	320	322	Right-handed 310
Helix 19	AC1	A	323	341	Right-handed alpha
Helix 20	AC2	A	359	373	Right-handed alpha
Helix 21	AC3	A	415	429	Right-handed alpha
Helix 22	AC4	A	429	434	Right-handed alpha
Helix 23	AC5	A	447	456	Right-handed alpha
Helix 24	AC6	A	467	472	Right-handed alpha
Helix 25	AC7	A	477	485	Right-handed alpha
Helix 26	AC8	A	498	503	Right-handed alpha
Helix 27	AC9	A	517	531	Right-handed alpha
Helix 28	AD1	A	551	558	Right-handed alpha
Helix 29	AD2	A	635	648	Right-handed alpha
Helix 30	AD3	B	28	32	Right-handed 310
Helix 31	AD4	B	33	35	Right-handed 310
Helix 32	AD5	B	36	47	Right-handed alpha
Helix 33	AD6	B	57	62	Right-handed alpha
Helix 34	AD7	B	75	78	Right-handed 310
Helix 35	AD8	B	79	90	Right-handed alpha
Helix 36	AD9	B	106	111	Right-handed 310
Helix 37	AE1	B	112	119	Right-handed alpha
Helix 38	AE2	B	120	123	Right-handed 310
Helix 39	AE3	B	144	166	Right-handed alpha
Helix 40	AE4	B	167	170	Right-handed 310
Helix 41	AE5	B	205	215	Right-handed alpha
Helix 42	AE6	B	243	273	Right-handed alpha
Helix 43	AE7	B	282	285	Right-handed 310
Helix 44	AE8	B	286	287	Right-handed 310
Helix 45	AE9	B	288	299	Right-handed alpha
Helix 46	AF1	B	320	322	Right-handed 310
Helix 47	AF2	B	323	341	Right-handed alpha
Helix 48	AF3	B	359	373	Right-handed alpha
Helix 49	AF4	B	415	429	Right-handed alpha
Helix 50	AF5	B	429	434	Right-handed alpha
Helix 51	AF6	B	447	456	Right-handed alpha
Helix 52	AF7	B	467	472	Right-handed alpha
Helix 53	AF8	B	477	485	Right-handed alpha
Helix 54	AF9	B	498	503	Right-handed alpha
Helix 55	AG1	B	517	530	Right-handed alpha
Helix 56	AG2	B	551	557	Right-handed alpha
Helix 57	AG3	B	569	573	Right-handed 310
Helix 58	AG4	B	635	648	Right-handed alpha

There are 17 sheets in PDB entry 5GSL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	13	15	anti-parallel
Strand 3	A	18	19	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	51	55	parallel
Strand 3	A	93	99	parallel
Strand 4	A	173	178	parallel
Strand 5	A	277	280	parallel
Strand 6	A	303	309	parallel
Strand 7	A	346	351	parallel
Strand 8	A	377	381	parallel
Strand 9	A	23	26	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	129	130	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	493	first strand
Strand 2	A	441	445	parallel
Strand 3	A	507	511	parallel
Strand 4	A	533	537	parallel
Strand 5	A	618	623	parallel
Strand 6	A	607	615	anti-parallel
Strand 7	A	599	604	anti-parallel
Strand 8	A	575	580	anti-parallel
Strand 9	A	583	589	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	561	first strand
Strand 2	A	595	596	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	656	first strand
Strand 2	A	680	686	anti-parallel
Strand 3	A	689	695	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	666	first strand
Strand 2	A	669	674	anti-parallel
Strand 3	A	699	709	anti-parallel
Strand 4	A	712	717	anti-parallel
Strand 5	A	738	743	anti-parallel
Strand 6	A	764	769	anti-parallel
Strand 7	A	754	759	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	725	first strand
Strand 2	A	728	732	anti-parallel
Strand 3	A	773	777	anti-parallel
Strand 4	A	750	751	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	13	15	anti-parallel
Strand 3	B	18	20	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	51	55	parallel
Strand 3	B	93	99	parallel
Strand 4	B	173	178	parallel
Strand 5	B	277	280	parallel
Strand 6	B	303	309	parallel
Strand 7	B	346	351	parallel
Strand 8	B	377	381	parallel
Strand 9	B	23	26	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	129	130	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	387	first strand
Strand 2	B	399	400	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	493	first strand
Strand 2	B	441	445	parallel
Strand 3	B	507	511	parallel
Strand 4	B	533	537	parallel
Strand 5	B	618	623	parallel
Strand 6	B	607	615	anti-parallel
Strand 7	B	599	604	anti-parallel
Strand 8	B	575	580	anti-parallel
Strand 9	B	586	589	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	561	first strand
Strand 2	B	595	596	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	656	first strand
Strand 2	B	680	686	anti-parallel
Strand 3	B	689	695	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	662	666	first strand
Strand 2	B	669	674	anti-parallel
Strand 3	B	699	709	anti-parallel
Strand 4	B	712	717	anti-parallel
Strand 5	B	738	743	anti-parallel
Strand 6	B	764	769	anti-parallel
Strand 7	B	754	759	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	725	first strand
Strand 2	B	728	732	anti-parallel
Strand 3	B	773	777	anti-parallel
Strand 4	B	750	751	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GSL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GSL