Analysis of interatomic Contacts of Structural Units in PDB entry:
5GSM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GSM entry

There are 2 chains in PDB entry 5GSM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 786
B	MET 1	MET 424

There are 61 helices in PDB entry 5GSM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	30	Right-handed 310
Helix 2	AA2	A	31	33	Right-handed 310
Helix 3	AA3	A	34	45	Right-handed alpha
Helix 4	AA4	A	55	60	Right-handed alpha
Helix 5	AA5	A	73	76	Right-handed 310
Helix 6	AA6	A	77	88	Right-handed alpha
Helix 7	AA7	A	104	109	Right-handed 310
Helix 8	AA8	A	110	117	Right-handed alpha
Helix 9	AA9	A	118	121	Right-handed 310
Helix 10	AB1	A	142	163	Right-handed alpha
Helix 11	AB2	A	164	168	Right-handed 310
Helix 12	AB3	A	195	200	Right-handed alpha
Helix 13	AB4	A	203	213	Right-handed alpha
Helix 14	AB5	A	214	223	Right-handed alpha
Helix 15	AB6	A	228	232	Right-handed 310
Helix 16	AB7	A	241	271	Right-handed alpha
Helix 17	AB8	A	280	283	Right-handed 310
Helix 18	AB9	A	284	285	Right-handed 310
Helix 19	AC1	A	286	297	Right-handed alpha
Helix 20	AC2	A	318	320	Right-handed 310
Helix 21	AC3	A	321	340	Right-handed alpha
Helix 22	AC4	A	357	368	Right-handed alpha
Helix 23	AC5	A	411	427	Right-handed alpha
Helix 24	AC6	A	444	454	Right-handed alpha
Helix 25	AC7	A	463	468	Right-handed alpha
Helix 26	AC8	A	473	481	Right-handed alpha
Helix 27	AC9	A	494	500	Right-handed alpha
Helix 28	AD1	A	513	526	Right-handed alpha
Helix 29	AD2	A	547	554	Right-handed alpha
Helix 30	AD3	A	565	569	Right-handed 310
Helix 31	AD4	A	631	644	Right-handed alpha
Helix 32	AD5	B	26	30	Right-handed 310
Helix 33	AD6	B	31	33	Right-handed 310
Helix 34	AD7	B	34	45	Right-handed alpha
Helix 35	AD8	B	55	60	Right-handed alpha
Helix 36	AD9	B	73	76	Right-handed 310
Helix 37	AE1	B	77	88	Right-handed alpha
Helix 38	AE2	B	104	109	Right-handed 310
Helix 39	AE3	B	110	117	Right-handed alpha
Helix 40	AE4	B	118	121	Right-handed 310
Helix 41	AE5	B	142	163	Right-handed alpha
Helix 42	AE6	B	164	168	Right-handed 310
Helix 43	AE7	B	195	200	Right-handed alpha
Helix 44	AE8	B	203	213	Right-handed alpha
Helix 45	AE9	B	214	223	Right-handed alpha
Helix 46	AF1	B	228	232	Right-handed 310
Helix 47	AF2	B	241	271	Right-handed alpha
Helix 48	AF3	B	280	283	Right-handed 310
Helix 49	AF4	B	284	285	Right-handed 310
Helix 50	AF5	B	286	298	Right-handed alpha
Helix 51	AF6	B	318	320	Right-handed 310
Helix 52	AF7	B	321	340	Right-handed alpha
Helix 53	AF8	B	357	368	Right-handed alpha
Helix 54	AF9	B	412	427	Right-handed alpha
Helix 55	AG1	B	444	454	Right-handed alpha
Helix 56	AG2	B	463	468	Right-handed alpha
Helix 57	AG3	B	473	481	Right-handed alpha
Helix 58	AG4	B	494	500	Right-handed alpha
Helix 59	AG5	B	513	526	Right-handed alpha
Helix 60	AG6	B	547	554	Right-handed alpha
Helix 61	AG7	B	631	645	Right-handed alpha

There are 23 sheets in PDB entry 5GSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	10	13	anti-parallel
Strand 3	A	16	17	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	49	53	parallel
Strand 3	A	91	95	parallel
Strand 4	A	171	175	parallel
Strand 5	A	275	278	parallel
Strand 6	A	301	307	parallel
Strand 7	A	344	349	parallel
Strand 8	A	375	379	parallel
Strand 9	A	21	24	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	127	128	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	385	first strand
Strand 2	A	397	398	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	435	first strand
Strand 2	A	658	663	anti-parallel
Strand 3	A	668	673	anti-parallel
Strand 4	A	705	710	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	489	first strand
Strand 2	A	439	443	parallel
Strand 3	A	503	507	parallel
Strand 4	A	529	533	parallel
Strand 5	A	614	619	parallel
Strand 6	A	603	611	anti-parallel
Strand 7	A	595	600	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	557	first strand
Strand 2	A	591	592	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	576	first strand
Strand 2	A	579	585	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	652	first strand
Strand 2	A	684	686	anti-parallel
Strand 3	A	689	691	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	682	first strand
Strand 2	A	698	700	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	714	first strand
Strand 2	A	717	722	anti-parallel
Strand 3	A	743	749	anti-parallel
Strand 4	A	770	775	anti-parallel
Strand 5	A	760	765	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	725	730	first strand
Strand 2	A	733	737	anti-parallel
Strand 3	A	780	785	anti-parallel
Strand 4	A	754	757	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	10	13	anti-parallel
Strand 3	B	16	17	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	49	53	parallel
Strand 3	B	91	95	parallel
Strand 4	B	171	175	parallel
Strand 5	B	275	278	parallel
Strand 6	B	301	307	parallel
Strand 7	B	344	349	parallel
Strand 8	B	375	379	parallel
Strand 9	B	21	24	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	385	first strand
Strand 2	B	397	398	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	489	first strand
Strand 2	B	439	443	parallel
Strand 3	B	503	507	parallel
Strand 4	B	529	533	parallel
Strand 5	B	614	619	parallel
Strand 6	B	603	611	anti-parallel
Strand 7	B	595	600	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	557	first strand
Strand 2	B	591	592	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	576	first strand
Strand 2	B	579	585	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	652	first strand
Strand 2	B	684	686	anti-parallel
Strand 3	B	689	691	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	658	663	first strand
Strand 2	B	668	673	anti-parallel
Strand 3	B	705	710	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	682	first strand
Strand 2	B	698	700	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	714	first strand
Strand 2	B	717	722	anti-parallel
Strand 3	B	743	749	anti-parallel
Strand 4	B	770	775	anti-parallel
Strand 5	B	760	765	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	730	first strand
Strand 2	B	733	737	anti-parallel
Strand 3	B	780	785	anti-parallel
Strand 4	B	754	757	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GSM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GSM