Analysis of interatomic Contacts of Structural Units in PDB entry:
5GSN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GSN entry

There are 4 chains in PDB entry 5GSN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLN 446
B	THR 2	GLN 446
C	THR 2	GLN 446
D	THR 2	GLN 446

There are 66 helices in PDB entry 5GSN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	27	Right-handed alpha
Helix 2	AA2	A	44	48	Right-handed 310
Helix 3	AA3	A	75	79	Right-handed 310
Helix 4	AA4	A	85	91	Right-handed alpha
Helix 5	AA5	A	99	115	Right-handed alpha
Helix 6	AA6	A	116	118	Right-handed 310
Helix 7	AA7	A	175	179	Right-handed 310
Helix 8	AA8	A	187	189	Right-handed 310
Helix 9	AA9	A	191	196	Right-handed 310
Helix 10	AB1	A	206	219	Right-handed alpha
Helix 11	AB2	A	300	302	Right-handed 310
Helix 12	AB3	A	321	338	Right-handed alpha
Helix 13	AB4	A	345	362	Right-handed alpha
Helix 14	AB5	A	365	382	Right-handed alpha
Helix 15	AB6	A	390	408	Right-handed alpha
Helix 16	AB7	A	432	436	Right-handed 310
Helix 17	AB8	A	440	446	Right-handed alpha
Helix 18	AB9	B	11	28	Right-handed alpha
Helix 19	AC1	B	44	48	Right-handed 310
Helix 20	AC2	B	75	79	Right-handed 310
Helix 21	AC3	B	85	91	Right-handed alpha
Helix 22	AC4	B	99	115	Right-handed alpha
Helix 23	AC5	B	116	118	Right-handed 310
Helix 24	AC6	B	175	179	Right-handed 310
Helix 25	AC7	B	187	189	Right-handed 310
Helix 26	AC8	B	191	196	Right-handed 310
Helix 27	AC9	B	206	219	Right-handed alpha
Helix 28	AD1	B	300	302	Right-handed 310
Helix 29	AD2	B	321	337	Right-handed alpha
Helix 30	AD3	B	345	361	Right-handed alpha
Helix 31	AD4	B	365	382	Right-handed alpha
Helix 32	AD5	B	390	408	Right-handed alpha
Helix 33	AD6	B	432	436	Right-handed 310
Helix 34	AD7	B	440	446	Right-handed alpha
Helix 35	AD8	C	11	28	Right-handed alpha
Helix 36	AD9	C	44	48	Right-handed 310
Helix 37	AE1	C	75	79	Right-handed 310
Helix 38	AE2	C	86	91	Right-handed alpha
Helix 39	AE3	C	99	115	Right-handed alpha
Helix 40	AE4	C	116	118	Right-handed 310
Helix 41	AE5	C	175	179	Right-handed 310
Helix 42	AE6	C	187	189	Right-handed 310
Helix 43	AE7	C	191	196	Right-handed 310
Helix 44	AE8	C	206	219	Right-handed alpha
Helix 45	AE9	C	300	302	Right-handed 310
Helix 46	AF1	C	321	337	Right-handed alpha
Helix 47	AF2	C	345	362	Right-handed alpha
Helix 48	AF3	C	365	383	Right-handed alpha
Helix 49	AF4	C	390	408	Right-handed alpha
Helix 50	AF5	C	440	446	Right-handed alpha
Helix 51	AF6	D	11	28	Right-handed alpha
Helix 52	AF7	D	44	48	Right-handed 310
Helix 53	AF8	D	75	80	Right-handed 310
Helix 54	AF9	D	85	91	Right-handed alpha
Helix 55	AG1	D	99	115	Right-handed alpha
Helix 56	AG2	D	116	118	Right-handed 310
Helix 57	AG3	D	187	189	Right-handed 310
Helix 58	AG4	D	191	196	Right-handed 310
Helix 59	AG5	D	206	219	Right-handed alpha
Helix 60	AG6	D	282	286	Right-handed 310
Helix 61	AG7	D	300	302	Right-handed 310
Helix 62	AG8	D	321	338	Right-handed alpha
Helix 63	AG9	D	345	362	Right-handed alpha
Helix 64	AH1	D	365	382	Right-handed alpha
Helix 65	AH2	D	390	408	Right-handed alpha
Helix 66	AH3	D	441	446	Right-handed alpha

There are 21 sheets in PDB entry 5GSN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	33	37	parallel
Strand 3	A	4	8	parallel
Strand 4	A	157	160	parallel
Strand 5	A	310	312	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	132	first strand
Strand 2	A	137	144	anti-parallel
Strand 3	A	149	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	274	275	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	185	first strand
Strand 2	A	267	270	parallel
Strand 3	A	199	203	parallel
Strand 4	A	223	227	parallel
Strand 5	A	241	244	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	251	first strand
Strand 2	A	254	257	anti-parallel
Strand 3	A	262	264	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	303	304	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	33	37	parallel
Strand 3	B	4	8	parallel
Strand 4	B	157	160	parallel
Strand 5	B	310	312	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	132	first strand
Strand 2	B	137	144	anti-parallel
Strand 3	B	149	155	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	185	first strand
Strand 2	B	267	270	parallel
Strand 3	B	199	203	parallel
Strand 4	B	223	227	parallel
Strand 5	B	241	244	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	251	first strand
Strand 2	B	254	257	anti-parallel
Strand 3	B	262	264	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	299	first strand
Strand 2	B	303	304	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	33	37	parallel
Strand 3	C	4	8	parallel
Strand 4	C	157	160	parallel
Strand 5	C	310	312	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	132	first strand
Strand 2	C	137	144	anti-parallel
Strand 3	C	149	155	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	185	first strand
Strand 2	C	267	270	parallel
Strand 3	C	199	203	parallel
Strand 4	C	223	227	parallel
Strand 5	C	241	244	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	251	first strand
Strand 2	C	254	257	anti-parallel
Strand 3	C	262	264	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	299	first strand
Strand 2	C	303	304	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	D	33	37	parallel
Strand 3	D	4	8	parallel
Strand 4	D	157	160	parallel
Strand 5	D	310	312	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	132	first strand
Strand 2	D	137	144	anti-parallel
Strand 3	D	149	155	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	185	first strand
Strand 2	D	267	270	parallel
Strand 3	D	199	203	parallel
Strand 4	D	223	227	parallel
Strand 5	D	241	244	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	251	first strand
Strand 2	D	254	257	anti-parallel
Strand 3	D	262	264	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	299	first strand
Strand 2	D	303	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GSN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GSN