Analysis of interatomic Contacts of Structural Units in PDB entry:
5GST


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GST entry

There are 2 chains in PDB entry 5GST (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1LYS 217
B
 PRO 1LYS 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5GST. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
14 22Right-handed alpha
Helix 2
H2
A
43 46Right-handed alpha
Helix 3
H3
A
72 82Right-handed alpha
Helix 4
H4
A
90 114Right-handed alpha
Helix 5
H5
A
119 141Right-handed alpha
Helix 6
H5A
A
119 126Right-handed alpha
Helix 7
H5B
A
130 141Right-handed alpha
Helix 8
H6
A
154 169Right-handed alpha
Helix 9
H7
A
178 188Right-handed alpha
Helix 10
H8
A
191 197Right-handed alpha
Helix 11
H9
B
14 22Right-handed alpha
Helix 12
H10
B
43 49Right-handed alpha
Helix 13
H11
B
72 82Right-handed alpha
Helix 14
H12
B
90 114Right-handed alpha
Helix 15
H13
B
119 141Right-handed alpha
Helix 16
H14
B
154 169Right-handed alpha
Helix 17
H15
B
178 188Right-handed alpha
Helix 18
H16
B
191 196Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5GST. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 4 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
2 7parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
2 7parallel
Strand 3
B
61 64anti-parallel
Strand 4
B
67 70anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il