Analysis of interatomic Contacts of Structural Units in PDB entry:
5GSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GSW entry

There are 5 chains in PDB entry 5GSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1SER 181
B
 PRO 2SER 181
C
 GLY 1SER 181
D
 GLY 1SER 181
E
 GLY 1SER 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5GSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 14Right-handed alpha
Helix 2
AA2
A
38 42Right-handed 310
Helix 3
AA3
A
86 90Right-handed 310
Helix 4
AA4
A
175 180Right-handed 310
Helix 5
AA5
B
3 14Right-handed alpha
Helix 6
AA6
B
38 42Right-handed 310
Helix 7
AA7
B
86 90Right-handed 310
Helix 8
AA8
B
175 180Right-handed 310
Helix 9
AA9
C
2 14Right-handed alpha
Helix 10
AB1
C
40 42Right-handed 310
Helix 11
AB2
C
86 90Right-handed 310
Helix 12
AB3
C
175 180Right-handed 310
Helix 13
AB4
D
3 14Right-handed alpha
Helix 14
AB5
D
40 42Right-handed 310
Helix 15
AB6
D
175 180Right-handed 310
Helix 16
AB7
E
2 12Right-handed alpha
Helix 17
AB8
E
40 42Right-handed 310
Helix 18
AB9
E
86 90Right-handed 310
Helix 19
AC1
E
175 179Right-handed 310
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There are 10 sheets in PDB entry 5GSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
23 31anti-parallel
Strand 3
A
34 37anti-parallel
Strand 4
A
69 77anti-parallel
Strand 5
A
52 63anti-parallel
Strand 6
A
46 49anti-parallel
Strand 7
A
15 20anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 104first strand
Strand 2
A
112 123anti-parallel
Strand 3
A
135 138anti-parallel
Strand 4
A
169 173anti-parallel
Strand 5
A
156 164anti-parallel
Strand 6
A
150 153anti-parallel
Strand 7
A
97 104anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 20first strand
Strand 2
B
23 31anti-parallel
Strand 3
B
34 37anti-parallel
Strand 4
B
69 77anti-parallel
Strand 5
B
52 63anti-parallel
Strand 6
B
46 49anti-parallel
Strand 7
B
15 20anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 104first strand
Strand 2
B
112 125anti-parallel
Strand 3
B
132 138anti-parallel
Strand 4
B
169 173anti-parallel
Strand 5
B
156 164anti-parallel
Strand 6
B
150 153anti-parallel
Strand 7
B
97 104anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 20first strand
Strand 2
C
23 31anti-parallel
Strand 3
C
34 38anti-parallel
Strand 4
C
69 78anti-parallel
Strand 5
C
52 63anti-parallel
Strand 6
C
46 49anti-parallel
Strand 7
C
15 20anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 103first strand
Strand 2
C
150 153anti-parallel
Strand 3
C
156 164anti-parallel
Strand 4
C
169 173anti-parallel
Strand 5
C
131 138anti-parallel
Strand 6
C
119 126anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 55first strand
Strand 2
D
46 49anti-parallel
Strand 3
D
15 20anti-parallel
Strand 4
D
23 31anti-parallel
Strand 5
D
34 38anti-parallel
Strand 6
D
72 76anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 106first strand
Strand 2
D
109 126anti-parallel
Strand 3
D
131 138anti-parallel
Strand 4
D
169 173anti-parallel
Strand 5
D
156 164anti-parallel
Strand 6
D
150 153anti-parallel
Strand 7
D
97 106anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
52 55first strand
Strand 2
E
46 49anti-parallel
Strand 3
E
15 19anti-parallel
Strand 4
E
24 31anti-parallel
Strand 5
E
34 38anti-parallel
Strand 6
E
69 76anti-parallel
Strand 7
E
59 63anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
112 115first strand
Strand 2
E
100 104anti-parallel
Strand 3
E
150 153anti-parallel
Strand 4
E
156 164anti-parallel
Strand 5
E
169 173anti-parallel
Strand 6
E
131 138anti-parallel
Strand 7
E
119 126anti-parallel
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