Analysis of interatomic Contacts of Structural Units in PDB entry:
5GSY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GSY entry

There is 1 chain in PDB entry 5GSY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 GLN 11ARG 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5GSY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
K
22 29Right-handed alpha
Helix 2
AA2
K
76 85Right-handed alpha
Helix 3
AA3
K
87 94Right-handed alpha
Helix 4
AA4
K
109 115Right-handed alpha
Helix 5
AA5
K
122 137Right-handed alpha
Helix 6
AA6
K
191 204Right-handed alpha
Helix 7
AA7
K
263 289Right-handed alpha
Helix 8
AA8
K
297 301Right-handed 310
Helix 9
AA9
K
303 308Right-handed alpha
Helix 10
AB1
K
326 328Right-handed 310
Helix 11
AB2
K
329 341Right-handed alpha
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There are 3 sheets in PDB entry 5GSY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
69 71first strand
Strand 2
K
12 18parallel
Strand 3
K
316 323parallel
Strand 4
K
98 103parallel
Strand 5
K
242 250parallel
Strand 6
K
220 232anti-parallel
Strand 7
K
142 154anti-parallel
Strand 8
K
157 158anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
34 36first strand
Strand 2
K
41 45anti-parallel
Strand 3
K
62 66anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
171 173first strand
Strand 2
K
179 181anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il