Analysis of interatomic Contacts of Structural Units in PDB entry:
5GT2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GT2 entry

There are 4 chains in PDB entry 5GT2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	ALA 300
B	GLN 4	ALA 300
C	GLN 4	ALA 300
D	GLN 4	ALA 300

There are 45 helices in PDB entry 5GT2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	29	Right-handed 310
Helix 2	AA2	A	30	49	Right-handed alpha
Helix 3	AA3	A	50	53	Right-handed 310
Helix 4	AA4	A	61	70	Right-handed alpha
Helix 5	AA5	A	103	119	Right-handed alpha
Helix 6	AA6	A	133	137	Right-handed 310
Helix 7	AA7	A	151	160	Right-handed alpha
Helix 8	AA8	A	180	185	Right-handed alpha
Helix 9	AA9	A	188	197	Right-handed alpha
Helix 10	AB1	A	215	221	Right-handed alpha
Helix 11	AB2	A	255	268	Right-handed alpha
Helix 12	AB3	A	276	280	Right-handed 310
Helix 13	AB4	B	27	29	Right-handed 310
Helix 14	AB5	B	30	49	Right-handed alpha
Helix 15	AB6	B	61	70	Right-handed alpha
Helix 16	AB7	B	103	119	Right-handed alpha
Helix 17	AB8	B	133	137	Right-handed 310
Helix 18	AB9	B	151	160	Right-handed alpha
Helix 19	AC1	B	180	185	Right-handed alpha
Helix 20	AC2	B	188	197	Right-handed alpha
Helix 21	AC3	B	215	221	Right-handed alpha
Helix 22	AC4	B	255	268	Right-handed alpha
Helix 23	AC5	B	276	280	Right-handed 310
Helix 24	AC6	C	29	49	Right-handed alpha
Helix 25	AC7	C	50	53	Right-handed 310
Helix 26	AC8	C	61	70	Right-handed alpha
Helix 27	AC9	C	103	119	Right-handed alpha
Helix 28	AD1	C	133	137	Right-handed 310
Helix 29	AD2	C	151	160	Right-handed alpha
Helix 30	AD3	C	180	185	Right-handed alpha
Helix 31	AD4	C	188	197	Right-handed alpha
Helix 32	AD5	C	215	221	Right-handed alpha
Helix 33	AD6	C	255	268	Right-handed alpha
Helix 34	AD7	C	276	280	Right-handed 310
Helix 35	AD8	D	29	49	Right-handed alpha
Helix 36	AD9	D	50	53	Right-handed 310
Helix 37	AE1	D	61	70	Right-handed alpha
Helix 38	AE2	D	103	119	Right-handed alpha
Helix 39	AE3	D	133	137	Right-handed 310
Helix 40	AE4	D	151	160	Right-handed alpha
Helix 41	AE5	D	180	185	Right-handed alpha
Helix 42	AE6	D	188	197	Right-handed alpha
Helix 43	AE7	D	215	221	Right-handed alpha
Helix 44	AE8	D	255	268	Right-handed alpha
Helix 45	AE9	D	276	280	Right-handed 310

There are 16 sheets in PDB entry 5GT2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	95	101	anti-parallel
Strand 3	A	16	24	anti-parallel
Strand 4	A	122	131	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	245	253	anti-parallel
Strand 3	A	170	179	anti-parallel
Strand 4	A	282	284	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	239	first strand
Strand 2	A	245	253	anti-parallel
Strand 3	A	170	179	anti-parallel
Strand 4	A	288	292	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	227	228	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	95	101	anti-parallel
Strand 3	B	16	24	anti-parallel
Strand 4	B	122	131	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	245	253	anti-parallel
Strand 3	B	170	179	anti-parallel
Strand 4	B	282	284	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	239	first strand
Strand 2	B	245	253	anti-parallel
Strand 3	B	170	179	anti-parallel
Strand 4	B	288	292	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	227	228	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	95	101	anti-parallel
Strand 3	C	16	24	anti-parallel
Strand 4	C	122	131	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	233	first strand
Strand 2	C	245	253	anti-parallel
Strand 3	C	170	179	anti-parallel
Strand 4	C	282	284	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	239	first strand
Strand 2	C	245	253	anti-parallel
Strand 3	C	170	179	anti-parallel
Strand 4	C	288	292	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	227	228	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	95	101	anti-parallel
Strand 3	D	16	24	anti-parallel
Strand 4	D	122	131	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	233	first strand
Strand 2	D	245	253	anti-parallel
Strand 3	D	170	179	anti-parallel
Strand 4	D	282	284	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	239	first strand
Strand 2	D	245	253	anti-parallel
Strand 3	D	170	179	anti-parallel
Strand 4	D	288	292	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	224	first strand
Strand 2	D	227	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GT2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GT2