Analysis of interatomic Contacts of Structural Units in PDB entry:
5GT5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GT5 entry

There are 2 chains in PDB entry 5GT5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3TYR 446
B
 GLY 3TYR 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5GT5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed 310
Helix 2
AA2
A
10 14Right-handed 310
Helix 3
AA3
A
35 44Right-handed alpha
Helix 4
AA4
A
66 70Right-handed 310
Helix 5
AA5
A
83 90Right-handed alpha
Helix 6
AA6
A
202 213Right-handed alpha
Helix 7
AA7
A
214 217Right-handed 310
Helix 8
AA8
A
218 226Right-handed alpha
Helix 9
AA9
A
232 242Right-handed alpha
Helix 10
AB1
A
255 260Right-handed 310
Helix 11
AB2
A
294 302Right-handed alpha
Helix 12
AB3
A
305 315Right-handed alpha
Helix 13
AB4
A
357 361Right-handed 310
Helix 14
AB5
A
415 417Right-handed 310
Helix 15
AB6
A
418 424Right-handed alpha
Helix 16
AB7
A
437 443Right-handed 310
Helix 17
AB8
B
3 8Right-handed 310
Helix 18
AB9
B
10 14Right-handed 310
Helix 19
AC1
B
35 44Right-handed alpha
Helix 20
AC2
B
66 70Right-handed 310
Helix 21
AC3
B
83 90Right-handed alpha
Helix 22
AC4
B
202 213Right-handed alpha
Helix 23
AC5
B
214 217Right-handed 310
Helix 24
AC6
B
218 226Right-handed alpha
Helix 25
AC7
B
232 242Right-handed alpha
Helix 26
AC8
B
255 260Right-handed 310
Helix 27
AC9
B
294 302Right-handed alpha
Helix 28
AD1
B
305 315Right-handed alpha
Helix 29
AD2
B
357 361Right-handed 310
Helix 30
AD3
B
415 417Right-handed 310
Helix 31
AD4
B
418 424Right-handed alpha
Helix 32
AD5
B
437 443Right-handed 310
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There are 8 sheets in PDB entry 5GT5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
51 54parallel
Strand 3
A
100 106parallel
Strand 4
A
123 128parallel
Strand 5
A
160 165parallel
Strand 6
A
184 189parallel
Strand 7
A
262 266parallel
Strand 8
A
284 288parallel
Strand 9
A
333 337parallel
Strand 10
A
363 367parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
111 113parallel
Strand 3
A
131 133parallel
Strand 4
A
168 169parallel
Strand 5
A
192 194parallel
Strand 6
A
269 271parallel
Strand 7
A
291 293parallel
Strand 8
A
340 342parallel
Strand 9
A
369 372parallel
Strand 10
A
378 380anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
115 120parallel
Strand 4
A
154 157parallel
Strand 5
A
177 180parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
279 281parallel
Strand 3
A
324 329parallel
Strand 4
A
346 349parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
51 54parallel
Strand 3
B
100 106parallel
Strand 4
B
123 128parallel
Strand 5
B
160 165parallel
Strand 6
B
184 189parallel
Strand 7
B
262 266parallel
Strand 8
B
284 288parallel
Strand 9
B
333 337parallel
Strand 10
B
363 367parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
111 113parallel
Strand 3
B
131 133parallel
Strand 4
B
168 169parallel
Strand 5
B
192 194parallel
Strand 6
B
269 271parallel
Strand 7
B
291 293parallel
Strand 8
B
340 342parallel
Strand 9
B
369 372parallel
Strand 10
B
378 380anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
92 97anti-parallel
Strand 3
B
115 120parallel
Strand 4
B
154 157parallel
Strand 5
B
177 180parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 249first strand
Strand 2
B
279 281parallel
Strand 3
B
324 329parallel
Strand 4
B
346 349parallel
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