Analysis of interatomic Contacts of Structural Units in PDB entry:
5GT8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GT8 entry

There are 3 chains in PDB entry 5GT8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 323
B	MET 1	GLN 321
C	MET 0	MET 114

There are 44 helices in PDB entry 5GT8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	22	Right-handed 310
Helix 2	AA2	A	23	33	Right-handed alpha
Helix 3	AA3	A	57	61	Right-handed alpha
Helix 4	AA4	A	96	101	Right-handed alpha
Helix 5	AA5	A	101	108	Right-handed alpha
Helix 6	AA6	A	127	138	Right-handed alpha
Helix 7	AA7	A	190	193	Right-handed 310
Helix 8	AA8	A	194	207	Right-handed alpha
Helix 9	AA9	A	243	247	Right-handed alpha
Helix 10	AB1	A	281	291	Right-handed alpha
Helix 11	AB2	A	312	323	Right-handed alpha
Helix 12	AB3	B	18	22	Right-handed 310
Helix 13	AB4	B	23	33	Right-handed alpha
Helix 14	AB5	B	57	61	Right-handed alpha
Helix 15	AB6	B	101	108	Right-handed alpha
Helix 16	AB7	B	129	138	Right-handed alpha
Helix 17	AB8	B	190	192	Right-handed 310
Helix 18	AB9	B	193	207	Right-handed alpha
Helix 19	AC1	B	243	247	Right-handed alpha
Helix 20	AC2	B	280	291	Right-handed alpha
Helix 21	AC3	B	312	320	Right-handed alpha
Helix 22	AC4	C	17	22	Right-handed 310
Helix 23	AC5	C	23	33	Right-handed alpha
Helix 24	AC6	C	34	37	Right-handed 310
Helix 25	AC7	C	57	61	Right-handed alpha
Helix 26	AC8	C	96	108	Right-handed alpha
Helix 27	AC9	C	129	136	Right-handed alpha
Helix 28	AD1	C	190	192	Right-handed 310
Helix 29	AD2	C	193	207	Right-handed alpha
Helix 30	AD3	C	243	247	Right-handed alpha
Helix 31	AD4	C	280	290	Right-handed alpha
Helix 32	AD5	C	309	311	Right-handed 310
Helix 33	AD6	C	312	323	Right-handed alpha
Helix 34	AD7	D	18	22	Right-handed 310
Helix 35	AD8	D	23	33	Right-handed alpha
Helix 36	AD9	D	34	37	Right-handed 310
Helix 37	AE1	D	57	62	Right-handed alpha
Helix 38	AE2	D	101	107	Right-handed alpha
Helix 39	AE3	D	129	136	Right-handed alpha
Helix 40	AE4	D	190	192	Right-handed 310
Helix 41	AE5	D	193	207	Right-handed alpha
Helix 42	AE6	D	244	249	Right-handed 310
Helix 43	AE7	D	284	289	Right-handed alpha
Helix 44	AE8	D	312	319	Right-handed alpha

There are 11 sheets in PDB entry 5GT8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	71	first strand
Strand 2	A	2	15	anti-parallel
Strand 3	A	142	147	parallel
Strand 4	A	150	153	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	121	126	anti-parallel
Strand 3	A	76	82	anti-parallel
Strand 4	A	2	15	anti-parallel
Strand 5	A	51	56	anti-parallel
Strand 6	A	41	46	anti-parallel
Strand 7	A	228	233	anti-parallel
Strand 8	A	236	242	anti-parallel
Strand 9	A	184	189	anti-parallel
Strand 10	A	255	256	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	263	268	anti-parallel
Strand 3	A	304	309	anti-parallel
Strand 4	A	296	299	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	71	first strand
Strand 2	B	2	16	anti-parallel
Strand 3	B	142	147	parallel
Strand 4	B	150	153	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	116	first strand
Strand 2	B	121	126	anti-parallel
Strand 3	B	76	82	anti-parallel
Strand 4	B	2	16	anti-parallel
Strand 5	B	50	56	anti-parallel
Strand 6	B	41	46	anti-parallel
Strand 7	B	228	233	anti-parallel
Strand 8	B	236	242	anti-parallel
Strand 9	B	184	188	anti-parallel
Strand 10	B	255	256	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	269	first strand
Strand 2	B	303	309	anti-parallel
Strand 3	B	296	299	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	116	first strand
Strand 2	C	121	126	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	2	5	anti-parallel
Strand 5	C	142	147	parallel
Strand 6	C	150	152	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	71	first strand
Strand 2	C	10	15	anti-parallel
Strand 3	C	50	56	anti-parallel
Strand 4	C	41	47	anti-parallel
Strand 5	C	228	233	anti-parallel
Strand 6	C	236	242	anti-parallel
Strand 7	C	183	189	anti-parallel
Strand 8	C	263	268	anti-parallel
Strand 9	C	304	308	anti-parallel
Strand 10	C	296	299	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	71	first strand
Strand 2	D	2	16	anti-parallel
Strand 3	D	142	147	parallel
Strand 4	D	150	153	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	116	first strand
Strand 2	D	121	126	anti-parallel
Strand 3	D	76	82	anti-parallel
Strand 4	D	2	16	anti-parallel
Strand 5	D	50	56	anti-parallel
Strand 6	D	41	46	anti-parallel
Strand 7	D	228	233	anti-parallel
Strand 8	D	236	242	anti-parallel
Strand 9	D	184	189	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	269	first strand
Strand 2	D	303	309	anti-parallel
Strand 3	D	296	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GT8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GT8