Analysis of interatomic Contacts of Structural Units in PDB entry:
5GTG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GTG entry

There are 8 chains in PDB entry 5GTG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 20SER 168
B
 LYS 20SER 168
C
 LYS 20SER 168
D
 LYS 20SER 168
E
 LYS 20SER 168
F
 LYS 20SER 168
G
 LYS 20SER 168
H
 LYS 20SER 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5GTG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 42Right-handed alpha
Helix 2
AA2
A
43 50Right-handed 310
Helix 3
AA3
A
124 127Right-handed 310
Helix 4
AA4
A
144 168Right-handed alpha
Helix 5
AA5
B
33 42Right-handed alpha
Helix 6
AA6
B
43 50Right-handed 310
Helix 7
AA7
B
124 127Right-handed 310
Helix 8
AA8
B
144 167Right-handed alpha
Helix 9
AA9
C
33 42Right-handed alpha
Helix 10
AB1
C
43 47Right-handed 310
Helix 11
AB2
C
124 127Right-handed 310
Helix 12
AB3
C
144 168Right-handed alpha
Helix 13
AB4
D
33 42Right-handed alpha
Helix 14
AB5
D
43 50Right-handed 310
Helix 15
AB6
D
124 127Right-handed 310
Helix 16
AB7
D
144 168Right-handed alpha
Helix 17
AB8
E
33 42Right-handed alpha
Helix 18
AB9
E
43 51Right-handed 310
Helix 19
AC1
E
124 127Right-handed 310
Helix 20
AC2
E
144 167Right-handed alpha
Helix 21
AC3
F
33 42Right-handed alpha
Helix 22
AC4
F
43 50Right-handed 310
Helix 23
AC5
F
124 127Right-handed 310
Helix 24
AC6
F
144 167Right-handed alpha
Helix 25
AC7
G
33 42Right-handed alpha
Helix 26
AC8
G
43 50Right-handed 310
Helix 27
AC9
G
124 127Right-handed 310
Helix 28
AD1
G
144 168Right-handed alpha
Helix 29
AD2
H
33 42Right-handed alpha
Helix 30
AD3
H
46 51Right-handed alpha
Helix 31
AD4
H
124 127Right-handed 310
Helix 32
AD5
H
144 168Right-handed alpha
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There are 17 sheets in PDB entry 5GTG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 29first strand
Strand 2
A
129 137anti-parallel
Strand 3
A
115 122anti-parallel
Strand 4
A
99 107anti-parallel
Strand 5
A
82 94anti-parallel
Strand 6
A
70 77anti-parallel
Strand 7
A
54 61anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
139 140anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 29first strand
Strand 2
B
129 137anti-parallel
Strand 3
B
115 122anti-parallel
Strand 4
B
99 107anti-parallel
Strand 5
B
82 94anti-parallel
Strand 6
B
70 77anti-parallel
Strand 7
B
54 61anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
139 140anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 29first strand
Strand 2
C
129 137anti-parallel
Strand 3
C
115 122anti-parallel
Strand 4
C
99 107anti-parallel
Strand 5
C
82 94anti-parallel
Strand 6
C
70 77anti-parallel
Strand 7
C
54 56anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 29first strand
Strand 2
C
129 137anti-parallel
Strand 3
C
115 122anti-parallel
Strand 4
C
99 107anti-parallel
Strand 5
C
82 94anti-parallel
Strand 6
C
70 77anti-parallel
Strand 7
C
59 61anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 112first strand
Strand 2
C
139 140anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 29first strand
Strand 2
D
129 137anti-parallel
Strand 3
D
115 122anti-parallel
Strand 4
D
99 107anti-parallel
Strand 5
D
82 94anti-parallel
Strand 6
D
70 77anti-parallel
Strand 7
D
54 61anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 112first strand
Strand 2
D
139 140anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 29first strand
Strand 2
E
129 137anti-parallel
Strand 3
E
115 122anti-parallel
Strand 4
E
99 107anti-parallel
Strand 5
E
82 94anti-parallel
Strand 6
E
70 77anti-parallel
Strand 7
E
54 61anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
111 112first strand
Strand 2
E
139 140anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
21 29first strand
Strand 2
F
129 137anti-parallel
Strand 3
F
115 122anti-parallel
Strand 4
F
99 107anti-parallel
Strand 5
F
82 94anti-parallel
Strand 6
F
70 77anti-parallel
Strand 7
F
54 61anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
111 112first strand
Strand 2
F
139 140anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
21 29first strand
Strand 2
G
129 137anti-parallel
Strand 3
G
115 122anti-parallel
Strand 4
G
99 107anti-parallel
Strand 5
G
82 94anti-parallel
Strand 6
G
70 77anti-parallel
Strand 7
G
54 61anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
111 112first strand
Strand 2
G
139 140anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
21 29first strand
Strand 2
H
129 137anti-parallel
Strand 3
H
115 122anti-parallel
Strand 4
H
99 107anti-parallel
Strand 5
H
83 94anti-parallel
Strand 6
H
70 76anti-parallel
Strand 7
H
54 61anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
111 112first strand
Strand 2
H
139 140anti-parallel
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