Analysis of interatomic Contacts of Structural Units in PDB entry:
5GTK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GTK entry

There are 4 chains in PDB entry 5GTK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	LYS 494
B	GLU 7	LYS 494
C	ILE 6	LYS 494
D	THR 4	LYS 494

There are 82 helices in PDB entry 5GTK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	17	Right-handed alpha
Helix 2	AA2	A	55	72	Right-handed alpha
Helix 3	AA3	A	73	78	Right-handed alpha
Helix 4	AA4	A	79	97	Right-handed alpha
Helix 5	AA5	A	97	109	Right-handed alpha
Helix 6	AA6	A	112	119	Right-handed alpha
Helix 7	AA7	A	119	133	Right-handed alpha
Helix 8	AA8	A	169	185	Right-handed alpha
Helix 9	AA9	A	197	211	Right-handed alpha
Helix 10	AB1	A	226	233	Right-handed alpha
Helix 11	AB2	A	245	258	Right-handed alpha
Helix 12	AB3	A	280	294	Right-handed alpha
Helix 13	AB4	A	295	298	Right-handed 310
Helix 14	AB5	A	310	327	Right-handed alpha
Helix 15	AB6	A	344	362	Right-handed alpha
Helix 16	AB7	A	391	396	Right-handed alpha
Helix 17	AB8	A	410	420	Right-handed alpha
Helix 18	AB9	A	433	444	Right-handed alpha
Helix 19	AC1	A	466	468	Right-handed 310
Helix 20	AC2	A	477	483	Right-handed alpha
Helix 21	AC3	B	9	16	Right-handed alpha
Helix 22	AC4	B	55	72	Right-handed alpha
Helix 23	AC5	B	73	78	Right-handed alpha
Helix 24	AC6	B	79	97	Right-handed alpha
Helix 25	AC7	B	97	109	Right-handed alpha
Helix 26	AC8	B	112	119	Right-handed alpha
Helix 27	AC9	B	119	135	Right-handed alpha
Helix 28	AD1	B	169	184	Right-handed alpha
Helix 29	AD2	B	197	211	Right-handed alpha
Helix 30	AD3	B	226	233	Right-handed alpha
Helix 31	AD4	B	245	258	Right-handed alpha
Helix 32	AD5	B	280	294	Right-handed alpha
Helix 33	AD6	B	295	298	Right-handed 310
Helix 34	AD7	B	312	327	Right-handed alpha
Helix 35	AD8	B	344	361	Right-handed alpha
Helix 36	AD9	B	391	396	Right-handed alpha
Helix 37	AE1	B	410	420	Right-handed alpha
Helix 38	AE2	B	433	444	Right-handed alpha
Helix 39	AE3	B	466	468	Right-handed 310
Helix 40	AE4	B	477	482	Right-handed 310
Helix 41	AE5	C	9	17	Right-handed alpha
Helix 42	AE6	C	55	72	Right-handed alpha
Helix 43	AE7	C	73	78	Right-handed alpha
Helix 44	AE8	C	79	97	Right-handed alpha
Helix 45	AE9	C	97	109	Right-handed alpha
Helix 46	AF1	C	112	119	Right-handed alpha
Helix 47	AF2	C	119	133	Right-handed alpha
Helix 48	AF3	C	169	185	Right-handed alpha
Helix 49	AF4	C	197	211	Right-handed alpha
Helix 50	AF5	C	226	233	Right-handed alpha
Helix 51	AF6	C	245	257	Right-handed alpha
Helix 52	AF7	C	258	260	Right-handed 310
Helix 53	AF8	C	280	294	Right-handed alpha
Helix 54	AF9	C	295	298	Right-handed 310
Helix 55	AG1	C	312	327	Right-handed alpha
Helix 56	AG2	C	344	361	Right-handed alpha
Helix 57	AG3	C	391	396	Right-handed alpha
Helix 58	AG4	C	410	420	Right-handed alpha
Helix 59	AG5	C	433	444	Right-handed alpha
Helix 60	AG6	C	466	468	Right-handed 310
Helix 61	AG7	C	477	482	Right-handed 310
Helix 62	AG8	D	9	17	Right-handed alpha
Helix 63	AG9	D	55	72	Right-handed alpha
Helix 64	AH1	D	73	78	Right-handed alpha
Helix 65	AH2	D	79	97	Right-handed alpha
Helix 66	AH3	D	97	109	Right-handed alpha
Helix 67	AH4	D	112	119	Right-handed alpha
Helix 68	AH5	D	119	133	Right-handed alpha
Helix 69	AH6	D	169	185	Right-handed alpha
Helix 70	AH7	D	197	211	Right-handed alpha
Helix 71	AH8	D	226	233	Right-handed alpha
Helix 72	AH9	D	245	257	Right-handed alpha
Helix 73	AI1	D	258	260	Right-handed 310
Helix 74	AI2	D	280	294	Right-handed alpha
Helix 75	AI3	D	295	298	Right-handed 310
Helix 76	AI4	D	312	327	Right-handed alpha
Helix 77	AI5	D	344	361	Right-handed alpha
Helix 78	AI6	D	391	396	Right-handed alpha
Helix 79	AI7	D	410	420	Right-handed alpha
Helix 80	AI8	D	433	444	Right-handed alpha
Helix 81	AI9	D	466	468	Right-handed 310
Helix 82	AJ1	D	476	482	Right-handed 310

There are 16 sheets in PDB entry 5GTK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	27	29	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	47	52	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	142	first strand
Strand 2	A	140	143	anti-parallel
Strand 3	A	149	157	anti-parallel
Strand 4	A	484	492	anti-parallel
Strand 5	D	448	451	parallel
Strand 6	D	426	430	parallel
Strand 7	D	272	275	parallel
Strand 8	D	305	309	parallel
Strand 9	D	402	408	parallel
Strand 10	D	382	385	parallel
Strand 11	D	364	367	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	219	first strand
Strand 2	A	187	191	parallel
Strand 3	A	160	164	parallel
Strand 4	A	239	243	parallel
Strand 5	A	263	266	parallel
Strand 6	A	470	471	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	367	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	402	408	parallel
Strand 4	A	305	309	parallel
Strand 5	A	272	275	parallel
Strand 6	A	426	430	parallel
Strand 7	A	448	451	parallel
Strand 8	D	484	492	parallel
Strand 9	D	149	157	anti-parallel
Strand 10	D	140	143	anti-parallel
Strand 11	B	140	142	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	27	29	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	47	52	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	157	first strand
Strand 2	B	484	492	anti-parallel
Strand 3	C	448	451	parallel
Strand 4	C	426	430	parallel
Strand 5	C	272	275	parallel
Strand 6	C	305	309	parallel
Strand 7	C	402	408	parallel
Strand 8	C	382	385	parallel
Strand 9	C	364	367	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	187	191	parallel
Strand 3	B	160	164	parallel
Strand 4	B	239	243	parallel
Strand 5	B	262	266	parallel
Strand 6	B	470	471	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	367	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	402	408	parallel
Strand 4	B	305	309	parallel
Strand 5	B	272	275	parallel
Strand 6	B	426	430	parallel
Strand 7	B	448	451	parallel
Strand 8	C	484	492	parallel
Strand 9	C	149	157	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	27	29	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	40	first strand
Strand 2	C	47	52	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	219	first strand
Strand 2	C	187	191	parallel
Strand 3	C	160	164	parallel
Strand 4	C	239	243	parallel
Strand 5	C	263	266	parallel
Strand 6	C	470	471	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	27	29	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	40	first strand
Strand 2	D	47	52	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	219	first strand
Strand 2	D	187	191	parallel
Strand 3	D	160	164	parallel
Strand 4	D	239	243	parallel
Strand 5	D	262	266	parallel
Strand 6	D	470	471	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GTK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GTK