Analysis of interatomic Contacts of Structural Units in PDB entry:
5GTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GTM entry

There are 2 chains in PDB entry 5GTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 48PRO 661
B
 LYS 48PRO 661
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 5GTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 62Right-handed alpha
Helix 2
AA2
A
63 67Right-handed 310
Helix 3
AA3
A
82 92Right-handed alpha
Helix 4
AA4
A
138 149Right-handed alpha
Helix 5
AA5
A
195 207Right-handed alpha
Helix 6
AA6
A
226 236Right-handed alpha
Helix 7
AA7
A
256 265Right-handed alpha
Helix 8
AA8
A
282 289Right-handed alpha
Helix 9
AA9
A
291 306Right-handed alpha
Helix 10
AB1
A
309 315Right-handed alpha
Helix 11
AB2
A
319 359Right-handed alpha
Helix 12
AB3
A
367 391Right-handed alpha
Helix 13
AB4
A
402 434Right-handed alpha
Helix 14
AB5
A
452 464Right-handed alpha
Helix 15
AB6
A
465 493Right-handed alpha
Helix 16
AB7
A
495 528Right-handed alpha
Helix 17
AB8
A
576 605Right-handed alpha
Helix 18
AB9
A
605 618Right-handed alpha
Helix 19
AC1
A
619 624Right-handed 310
Helix 20
AC2
A
625 630Right-handed alpha
Helix 21
AC3
A
633 660Right-handed alpha
Helix 22
AC4
B
49 62Right-handed alpha
Helix 23
AC5
B
82 92Right-handed alpha
Helix 24
AC6
B
135 137Right-handed 310
Helix 25
AC7
B
138 151Right-handed alpha
Helix 26
AC8
B
194 207Right-handed alpha
Helix 27
AC9
B
226 236Right-handed alpha
Helix 28
AD1
B
256 265Right-handed alpha
Helix 29
AD2
B
282 287Right-handed alpha
Helix 30
AD3
B
291 306Right-handed alpha
Helix 31
AD4
B
309 315Right-handed alpha
Helix 32
AD5
B
319 357Right-handed alpha
Helix 33
AD6
B
358 361Right-handed 310
Helix 34
AD7
B
367 391Right-handed alpha
Helix 35
AD8
B
402 434Right-handed alpha
Helix 36
AD9
B
454 464Right-handed alpha
Helix 37
AE1
B
465 493Right-handed alpha
Helix 38
AE2
B
495 524Right-handed alpha
Helix 39
AE3
B
525 530Right-handed 310
Helix 40
AE4
B
580 605Right-handed alpha
Helix 41
AE5
B
605 618Right-handed alpha
Helix 42
AE6
B
619 624Right-handed 310
Helix 43
AE7
B
625 630Right-handed alpha
Helix 44
AE8
B
633 660Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5GTM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
124 126anti-parallel
Strand 3
A
162 168anti-parallel
Strand 4
A
107 113parallel
Strand 5
A
174 178anti-parallel
Strand 6
A
72 76parallel
Strand 7
A
211 218parallel
Strand 8
A
242 247parallel
Strand 9
A
275 277parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
162 168anti-parallel
Strand 3
B
107 113parallel
Strand 4
B
175 178anti-parallel
Strand 5
B
72 76parallel
Strand 6
B
211 218parallel
Strand 7
B
242 247parallel
Strand 8
B
275 277parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il