Analysis of interatomic Contacts of Structural Units in PDB entry:
5GTY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GTY entry

There are 8 chains in PDB entry 5GTY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 700	ASP 1014
B	ASN 700	ASP 1014
D	GLN 701	ASP 1014
E	GLN 701	ASP 1014
F	ASN 700	ALA 1013
G	PRO 699	ASP 1014
H	ASN 700	TYR 1016
C	ASN 700	ALA 1013

There are 97 helices in PDB entry 5GTY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	708	710	Right-handed 310
Helix 2	AA2	A	755	767	Right-handed alpha
Helix 3	AA3	A	797	805	Right-handed alpha
Helix 4	AA4	A	810	831	Right-handed alpha
Helix 5	AA5	A	839	841	Right-handed 310
Helix 6	AA6	A	857	862	Right-handed alpha
Helix 7	AA7	A	882	889	Right-handed alpha
Helix 8	AA8	A	892	909	Right-handed alpha
Helix 9	AA9	A	919	930	Right-handed alpha
Helix 10	AB1	A	940	951	Right-handed alpha
Helix 11	AB2	A	960	974	Right-handed alpha
Helix 12	AB3	A	974	979	Right-handed alpha
Helix 13	AB4	A	991	1003	Right-handed alpha
Helix 14	AB5	B	708	710	Right-handed 310
Helix 15	AB6	B	755	769	Right-handed alpha
Helix 16	AB7	B	797	805	Right-handed alpha
Helix 17	AB8	B	810	831	Right-handed alpha
Helix 18	AB9	B	857	862	Right-handed alpha
Helix 19	AC1	B	882	889	Right-handed alpha
Helix 20	AC2	B	892	909	Right-handed alpha
Helix 21	AC3	B	919	930	Right-handed alpha
Helix 22	AC4	B	940	951	Right-handed alpha
Helix 23	AC5	B	960	973	Right-handed alpha
Helix 24	AC6	B	974	979	Right-handed alpha
Helix 25	AC7	B	991	1003	Right-handed alpha
Helix 26	AC8	D	708	710	Right-handed 310
Helix 27	AC9	D	756	768	Right-handed alpha
Helix 28	AD1	D	798	805	Right-handed alpha
Helix 29	AD2	D	806	809	Right-handed 310
Helix 30	AD3	D	810	831	Right-handed alpha
Helix 31	AD4	D	857	862	Right-handed alpha
Helix 32	AD5	D	882	889	Right-handed alpha
Helix 33	AD6	D	892	909	Right-handed alpha
Helix 34	AD7	D	919	930	Right-handed alpha
Helix 35	AD8	D	940	951	Right-handed alpha
Helix 36	AD9	D	954	958	Right-handed 310
Helix 37	AE1	D	960	974	Right-handed alpha
Helix 38	AE2	D	974	979	Right-handed alpha
Helix 39	AE3	D	991	1003	Right-handed alpha
Helix 40	AE4	E	756	769	Right-handed alpha
Helix 41	AE5	E	798	805	Right-handed alpha
Helix 42	AE6	E	810	831	Right-handed alpha
Helix 43	AE7	E	857	862	Right-handed alpha
Helix 44	AE8	E	882	889	Right-handed alpha
Helix 45	AE9	E	892	909	Right-handed alpha
Helix 46	AF1	E	919	930	Right-handed alpha
Helix 47	AF2	E	940	951	Right-handed alpha
Helix 48	AF3	E	960	974	Right-handed alpha
Helix 49	AF4	E	974	979	Right-handed alpha
Helix 50	AF5	E	991	1002	Right-handed alpha
Helix 51	AF6	F	708	710	Right-handed 310
Helix 52	AF7	F	755	769	Right-handed alpha
Helix 53	AF8	F	797	805	Right-handed alpha
Helix 54	AF9	F	810	831	Right-handed alpha
Helix 55	AG1	F	857	862	Right-handed alpha
Helix 56	AG2	F	882	889	Right-handed alpha
Helix 57	AG3	F	892	910	Right-handed alpha
Helix 58	AG4	F	919	930	Right-handed alpha
Helix 59	AG5	F	940	951	Right-handed alpha
Helix 60	AG6	F	960	974	Right-handed alpha
Helix 61	AG7	F	974	979	Right-handed alpha
Helix 62	AG8	F	991	1002	Right-handed alpha
Helix 63	AG9	G	756	769	Right-handed alpha
Helix 64	AH1	G	797	805	Right-handed alpha
Helix 65	AH2	G	810	832	Right-handed alpha
Helix 66	AH3	G	857	862	Right-handed alpha
Helix 67	AH4	G	882	889	Right-handed alpha
Helix 68	AH5	G	892	909	Right-handed alpha
Helix 69	AH6	G	919	930	Right-handed alpha
Helix 70	AH7	G	940	951	Right-handed alpha
Helix 71	AH8	G	954	958	Right-handed 310
Helix 72	AH9	G	960	974	Right-handed alpha
Helix 73	AI1	G	974	979	Right-handed alpha
Helix 74	AI2	G	991	1002	Right-handed alpha
Helix 75	AI3	H	756	769	Right-handed alpha
Helix 76	AI4	H	797	805	Right-handed alpha
Helix 77	AI5	H	810	831	Right-handed alpha
Helix 78	AI6	H	857	862	Right-handed alpha
Helix 79	AI7	H	882	889	Right-handed alpha
Helix 80	AI8	H	892	909	Right-handed alpha
Helix 81	AI9	H	919	921	Right-handed 310
Helix 82	AJ1	H	922	930	Right-handed alpha
Helix 83	AJ2	H	940	951	Right-handed alpha
Helix 84	AJ3	H	960	974	Right-handed alpha
Helix 85	AJ4	H	974	979	Right-handed alpha
Helix 86	AJ5	H	991	1002	Right-handed alpha
Helix 87	AJ6	C	755	769	Right-handed alpha
Helix 88	AJ7	C	797	806	Right-handed alpha
Helix 89	AJ8	C	810	831	Right-handed alpha
Helix 90	AJ9	C	882	889	Right-handed alpha
Helix 91	AK1	C	892	909	Right-handed alpha
Helix 92	AK2	C	919	930	Right-handed alpha
Helix 93	AK3	C	940	951	Right-handed alpha
Helix 94	AK4	C	954	958	Right-handed 310
Helix 95	AK5	C	960	974	Right-handed alpha
Helix 96	AK6	C	974	979	Right-handed alpha
Helix 97	AK7	C	991	1002	Right-handed alpha

There are 15 sheets in PDB entry 5GTY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	779	781	parallel
Strand 3	A	787	791	anti-parallel
Strand 4	A	740	747	anti-parallel
Strand 5	A	724	731	anti-parallel
Strand 6	A	712	720	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	845	first strand
Strand 2	A	851	853	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	706	first strand
Strand 2	B	779	781	parallel
Strand 3	B	787	791	anti-parallel
Strand 4	B	740	747	anti-parallel
Strand 5	B	724	731	anti-parallel
Strand 6	B	712	720	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	705	706	first strand
Strand 2	D	779	781	parallel
Strand 3	D	786	791	anti-parallel
Strand 4	D	740	747	anti-parallel
Strand 5	D	725	731	anti-parallel
Strand 6	D	712	720	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	796	797	first strand
Strand 2	D	843	845	anti-parallel
Strand 3	D	851	853	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	705	706	first strand
Strand 2	E	779	781	parallel
Strand 3	E	786	791	anti-parallel
Strand 4	E	740	747	anti-parallel
Strand 5	E	724	731	anti-parallel
Strand 6	E	712	720	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	796	797	first strand
Strand 2	E	843	847	anti-parallel
Strand 3	E	850	853	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	705	706	first strand
Strand 2	F	779	781	parallel
Strand 3	F	787	791	anti-parallel
Strand 4	F	740	747	anti-parallel
Strand 5	F	724	731	anti-parallel
Strand 6	F	712	720	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	843	845	first strand
Strand 2	F	851	853	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	705	706	first strand
Strand 2	G	777	781	parallel
Strand 3	G	787	790	anti-parallel
Strand 4	G	740	747	anti-parallel
Strand 5	G	724	731	anti-parallel
Strand 6	G	712	720	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	843	845	first strand
Strand 2	G	851	853	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	705	706	first strand
Strand 2	H	779	781	parallel
Strand 3	H	787	790	anti-parallel
Strand 4	H	740	747	anti-parallel
Strand 5	H	724	731	anti-parallel
Strand 6	H	712	720	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	844	845	first strand
Strand 2	H	851	852	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	706	first strand
Strand 2	C	779	781	parallel
Strand 3	C	787	791	anti-parallel
Strand 4	C	740	747	anti-parallel
Strand 5	C	724	731	anti-parallel
Strand 6	C	712	720	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	843	847	first strand
Strand 2	C	850	853	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GTY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GTY