Analysis of interatomic Contacts of Structural Units in PDB entry:
5GU6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GU6 entry

There is 1 chain in PDB entry 5GU6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -4ASP 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5GU6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 17Right-handed alpha
Helix 2
AA2
A
29 50Right-handed alpha
Helix 3
AA3
A
66 73Right-handed alpha
Helix 4
AA4
A
99 112Right-handed alpha
Helix 5
AA5
A
121 126Right-handed alpha
Helix 6
AA6
A
143 157Right-handed alpha
Helix 7
AA7
A
166 171Right-handed alpha
Helix 8
AA8
A
172 174Right-handed 310
Helix 9
AA9
A
200 213Right-handed alpha
Helix 10
AB1
A
223 230Right-handed alpha
Helix 11
AB2
A
243 258Right-handed alpha
Helix 12
AB3
A
259 262Right-handed 310
Helix 13
AB4
A
275 282Right-handed alpha
Helix 14
AB5
A
285 289Right-handed 310
Helix 15
AB6
A
305 311Right-handed 310
Helix 16
AB7
A
313 324Right-handed alpha
Helix 17
AB8
A
325 334Right-handed alpha
Helix 18
AB9
A
357 362Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5GU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
57 62parallel
Strand 3
A
20 25parallel
Strand 4
A
80 85anti-parallel
Strand 5
A
88 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
369 370anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
161 165parallel
Strand 3
A
133 137parallel
Strand 4
A
179 183anti-parallel
Strand 5
A
192 193anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
266 271parallel
Strand 3
A
234 239parallel
Strand 4
A
291 295anti-parallel
Strand 5
A
300 302anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il