Analysis of interatomic Contacts of Structural Units in PDB entry:
5GUH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GUH entry

There are 2 chains in PDB entry 5GUH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 130LEU 899
B
 U 1 U 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5GUH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
181 191Right-handed alpha
Helix 2
AA2
A
192 197Right-handed alpha
Helix 3
AA3
A
244 262Right-handed alpha
Helix 4
AA4
A
274 277Right-handed 310
Helix 5
AA5
A
281 283Right-handed 310
Helix 6
AA6
A
318 329Right-handed alpha
Helix 7
AA7
A
336 342Right-handed alpha
Helix 8
AA8
A
379 387Right-handed alpha
Helix 9
AA9
A
419 421Right-handed 310
Helix 10
AB1
A
429 435Right-handed alpha
Helix 11
AB2
A
435 447Right-handed alpha
Helix 12
AB3
A
449 466Right-handed alpha
Helix 13
AB4
A
467 476Right-handed alpha
Helix 14
AB5
A
501 503Right-handed 310
Helix 15
AB6
A
515 520Right-handed alpha
Helix 16
AB7
A
541 559Right-handed alpha
Helix 17
AB8
A
575 590Right-handed alpha
Helix 18
AB9
A
603 616Right-handed alpha
Helix 19
AC1
A
627 631Right-handed alpha
Helix 20
AC2
A
634 650Right-handed alpha
Helix 21
AC3
A
710 729Right-handed alpha
Helix 22
AC4
A
743 745Right-handed 310
Helix 23
AC5
A
746 753Right-handed alpha
Helix 24
AC6
A
753 767Right-handed alpha
Helix 25
AC7
A
842 854Right-handed alpha
Helix 26
AC8
A
867 883Right-handed alpha
Helix 27
AC9
A
889 893Right-handed 310
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There are 8 sheets in PDB entry 5GUH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 703first strand
Strand 2
A
681 688anti-parallel
Strand 3
A
664 673anti-parallel
Strand 4
A
734 740parallel
Strand 5
A
773 779parallel
Strand 6
A
830 837anti-parallel
Strand 7
A
814 817anti-parallel
Strand 8
A
801 803anti-parallel
Strand 9
A
486 492anti-parallel
Strand 10
A
149 155anti-parallel
Strand 11
A
786 790anti-parallel
Strand 12
A
793 795anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
270 272anti-parallel
Strand 3
A
285 297anti-parallel
Strand 4
A
302 317anti-parallel
Strand 5
A
423 426anti-parallel
Strand 6
A
345 348anti-parallel
Strand 7
A
353 356anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
285 297anti-parallel
Strand 3
A
302 317anti-parallel
Strand 4
A
157 162anti-parallel
Strand 5
A
479 481anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
205 208anti-parallel
Strand 3
A
168 175anti-parallel
Strand 4
A
230 240anti-parallel
Strand 5
A
218 221anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
398 403anti-parallel
Strand 3
A
414 418anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 372first strand
Strand 2
A
375 378anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 499first strand
Strand 2
A
505 507anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 571first strand
Strand 2
A
533 538parallel
Strand 3
A
594 599parallel
Strand 4
A
622 626parallel
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