Analysis of interatomic Contacts of Structural Units in PDB entry:
5GUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GUJ entry

There is 1 chain in PDB entry 5GUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 112SER 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5GUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
112 135Right-handed alpha
Helix 2
AA2
A
137 147Right-handed alpha
Helix 3
AA3
A
151 159Right-handed alpha
Helix 4
AA4
A
168 177Right-handed alpha
Helix 5
AA5
A
180 187Right-handed alpha
Helix 6
AA6
A
250 262Right-handed alpha
Helix 7
AA7
A
269 279Right-handed alpha
Helix 8
AA8
A
293 304Right-handed alpha
Helix 9
AA9
A
314 331Right-handed alpha
Helix 10
AB1
A
345 354Right-handed alpha
Helix 11
AB2
A
354 362Right-handed alpha
Helix 12
AB3
A
369 377Right-handed alpha
Helix 13
AB4
A
385 401Right-handed alpha
Helix 14
AB5
A
405 421Right-handed alpha
Helix 15
AB6
A
423 435Right-handed alpha
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There are 3 sheets in PDB entry 5GUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
206 212anti-parallel
Strand 3
A
218 225anti-parallel
Strand 4
A
233 235anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
199 201anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
263 268parallel
Strand 3
A
306 309parallel
Strand 4
A
334 337parallel
Strand 5
A
367 368anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il