Analysis of interatomic Contacts of Structural Units in PDB entry:
5GUW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GUW entry

There are 5 chains in PDB entry 5GUW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 5	GLY 146
B	PHE 10	PHE 458
C	PHE 5	GLY 146
D	PHE 10	PHE 458
M	ALA 6	PRO 85

There are 80 helices in PDB entry 5GUW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	41	Right-handed alpha
Helix 2	AA2	A	42	45	Right-handed 310
Helix 3	AA3	A	46	59	Right-handed alpha
Helix 4	AA4	A	60	64	Right-handed 310
Helix 5	AA5	A	81	85	Right-handed 310
Helix 6	AA6	A	86	102	Right-handed alpha
Helix 7	AA7	A	118	134	Right-handed alpha
Helix 8	AA8	B	11	14	Right-handed 310
Helix 9	AA9	B	15	41	Right-handed alpha
Helix 10	AB1	B	52	85	Right-handed alpha
Helix 11	AB2	B	90	115	Right-handed alpha
Helix 12	AB3	B	116	124	Right-handed alpha
Helix 13	AB4	B	140	164	Right-handed alpha
Helix 14	AB5	B	168	185	Right-handed alpha
Helix 15	AB6	B	186	189	Right-handed 310
Helix 16	AB7	B	194	211	Right-handed alpha
Helix 17	AB8	B	212	231	Right-handed alpha
Helix 18	AB9	B	233	256	Right-handed alpha
Helix 19	AC1	B	257	260	Right-handed 310
Helix 20	AC2	B	267	278	Right-handed alpha
Helix 21	AC3	B	280	297	Right-handed alpha
Helix 22	AC4	B	304	322	Right-handed alpha
Helix 23	AC5	B	323	328	Right-handed alpha
Helix 24	AC6	B	331	339	Right-handed alpha
Helix 25	AC7	B	341	368	Right-handed alpha
Helix 26	AC8	B	369	372	Right-handed 310
Helix 27	AC9	B	379	416	Right-handed alpha
Helix 28	AD1	B	425	433	Right-handed alpha
Helix 29	AD2	B	433	457	Right-handed alpha
Helix 30	AD3	C	6	41	Right-handed alpha
Helix 31	AD4	C	42	45	Right-handed 310
Helix 32	AD5	C	46	59	Right-handed alpha
Helix 33	AD6	C	60	64	Right-handed 310
Helix 34	AD7	C	81	85	Right-handed 310
Helix 35	AD8	C	86	102	Right-handed alpha
Helix 36	AD9	C	118	134	Right-handed alpha
Helix 37	AE1	D	11	14	Right-handed 310
Helix 38	AE2	D	15	41	Right-handed alpha
Helix 39	AE3	D	52	85	Right-handed alpha
Helix 40	AE4	D	90	115	Right-handed alpha
Helix 41	AE5	D	116	124	Right-handed alpha
Helix 42	AE6	D	140	164	Right-handed alpha
Helix 43	AE7	D	168	185	Right-handed alpha
Helix 44	AE8	D	186	189	Right-handed 310
Helix 45	AE9	D	194	211	Right-handed alpha
Helix 46	AF1	D	212	231	Right-handed alpha
Helix 47	AF2	D	233	256	Right-handed alpha
Helix 48	AF3	D	257	260	Right-handed 310
Helix 49	AF4	D	267	278	Right-handed alpha
Helix 50	AF5	D	280	297	Right-handed alpha
Helix 51	AF6	D	304	322	Right-handed alpha
Helix 52	AF7	D	323	328	Right-handed alpha
Helix 53	AF8	D	331	339	Right-handed alpha
Helix 54	AF9	D	341	368	Right-handed alpha
Helix 55	AG1	D	369	372	Right-handed 310
Helix 56	AG2	D	379	416	Right-handed alpha
Helix 57	AG3	D	425	433	Right-handed alpha
Helix 58	AG4	D	433	457	Right-handed alpha
Helix 59	AG5	M	7	11	Right-handed alpha
Helix 60	AG6	M	32	47	Right-handed alpha
Helix 61	AG7	M	47	52	Right-handed alpha
Helix 62	AG8	M	64	72	Right-handed alpha
Helix 63	AG9	M	72	83	Right-handed alpha
Helix 64	AH1	M	98	109	Right-handed alpha
Helix 65	AH2	M	120	128	Right-handed alpha
Helix 66	AH3	M	146	150	Right-handed 310
Helix 67	AH4	M	444	449	Right-handed alpha
Helix 68	AH5	M	467	473	Right-handed alpha
Helix 69	AH6	M	534	540	Right-handed alpha
Helix 70	AH7	N	7	11	Right-handed alpha
Helix 71	AH8	N	32	47	Right-handed alpha
Helix 72	AH9	N	47	52	Right-handed alpha
Helix 73	AI1	N	64	72	Right-handed alpha
Helix 74	AI2	N	72	83	Right-handed alpha
Helix 75	AI3	N	98	109	Right-handed alpha
Helix 76	AI4	N	120	128	Right-handed alpha
Helix 77	AI5	N	146	150	Right-handed 310
Helix 78	AI6	N	444	449	Right-handed alpha
Helix 79	AI7	N	467	473	Right-handed alpha
Helix 80	AI8	N	534	540	Right-handed alpha

There are 19 sheets in PDB entry 5GUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	70	71	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	70	71	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	130	first strand
Strand 2	M	213	219	anti-parallel
Strand 3	M	201	206	anti-parallel
Strand 4	M	192	197	anti-parallel
Strand 5	M	181	186	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	151	155	first strand
Strand 2	M	160	164	anti-parallel
Strand 3	M	171	176	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	223	229	first strand
Strand 2	M	239	246	anti-parallel
Strand 3	M	249	254	anti-parallel
Strand 4	M	260	265	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	268	269	first strand
Strand 2	M	276	277	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	282	287	first strand
Strand 2	M	293	298	anti-parallel
Strand 3	M	303	308	anti-parallel
Strand 4	M	315	321	anti-parallel
Strand 5	N	315	321	anti-parallel
Strand 6	N	303	308	anti-parallel
Strand 7	N	293	298	anti-parallel
Strand 8	N	282	287	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	326	331	first strand
Strand 2	M	337	342	anti-parallel
Strand 3	M	347	352	anti-parallel
Strand 4	M	357	363	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	374	378	first strand
Strand 2	M	382	388	anti-parallel
Strand 3	M	394	399	anti-parallel
Strand 4	M	412	417	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	426	427	first strand
Strand 2	M	434	438	anti-parallel
Strand 3	M	451	455	anti-parallel
Strand 4	M	464	466	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	480	486	first strand
Strand 2	M	492	498	anti-parallel
Strand 3	M	506	511	anti-parallel
Strand 4	M	516	521	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	129	130	first strand
Strand 2	N	213	219	anti-parallel
Strand 3	N	201	206	anti-parallel
Strand 4	N	192	197	anti-parallel
Strand 5	N	181	186	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	151	155	first strand
Strand 2	N	160	164	anti-parallel
Strand 3	N	171	176	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	223	229	first strand
Strand 2	N	239	246	anti-parallel
Strand 3	N	249	254	anti-parallel
Strand 4	N	260	265	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	268	269	first strand
Strand 2	N	276	277	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	326	331	first strand
Strand 2	N	337	342	anti-parallel
Strand 3	N	347	352	anti-parallel
Strand 4	N	357	363	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	374	378	first strand
Strand 2	N	382	388	anti-parallel
Strand 3	N	394	399	anti-parallel
Strand 4	N	412	417	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	426	427	first strand
Strand 2	N	434	438	anti-parallel
Strand 3	N	451	455	anti-parallel
Strand 4	N	464	466	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	480	486	first strand
Strand 2	N	492	498	anti-parallel
Strand 3	N	506	511	anti-parallel
Strand 4	N	516	521	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GUW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GUW