Analysis of interatomic Contacts of Structural Units in PDB entry:
5GUX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GUX entry

There are 4 chains in PDB entry 5GUX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	GLU 213
H	GLU 1	GLY 225
B	PHE 10	PHE 458
C	PHE 5	GLY 146

There are 37 helices in PDB entry 5GUX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	79	83	Right-handed 310
Helix 2	AA2	L	121	127	Right-handed alpha
Helix 3	AA3	L	183	188	Right-handed alpha
Helix 4	AA4	H	28	32	Right-handed 310
Helix 5	AA5	H	62	65	Right-handed 310
Helix 6	AA6	H	74	76	Right-handed 310
Helix 7	AA7	H	87	91	Right-handed 310
Helix 8	AA8	H	167	169	Right-handed 310
Helix 9	AA9	H	211	214	Right-handed 310
Helix 10	AB1	B	11	14	Right-handed 310
Helix 11	AB2	B	15	41	Right-handed alpha
Helix 12	AB3	B	52	84	Right-handed alpha
Helix 13	AB4	B	90	115	Right-handed alpha
Helix 14	AB5	B	116	124	Right-handed alpha
Helix 15	AB6	B	140	164	Right-handed alpha
Helix 16	AB7	B	168	185	Right-handed alpha
Helix 17	AB8	B	186	190	Right-handed 310
Helix 18	AB9	B	194	211	Right-handed alpha
Helix 19	AC1	B	212	231	Right-handed alpha
Helix 20	AC2	B	233	256	Right-handed alpha
Helix 21	AC3	B	257	260	Right-handed 310
Helix 22	AC4	B	267	278	Right-handed alpha
Helix 23	AC5	B	280	297	Right-handed alpha
Helix 24	AC6	B	304	323	Right-handed alpha
Helix 25	AC7	B	323	329	Right-handed alpha
Helix 26	AC8	B	331	339	Right-handed alpha
Helix 27	AC9	B	341	372	Right-handed alpha
Helix 28	AD1	B	379	416	Right-handed alpha
Helix 29	AD2	B	425	433	Right-handed alpha
Helix 30	AD3	B	433	456	Right-handed alpha
Helix 31	AD4	C	6	40	Right-handed alpha
Helix 32	AD5	C	41	45	Right-handed 310
Helix 33	AD6	C	46	60	Right-handed alpha
Helix 34	AD7	C	61	64	Right-handed 310
Helix 35	AD8	C	80	85	Right-handed 310
Helix 36	AD9	C	86	101	Right-handed alpha
Helix 37	AE1	C	118	133	Right-handed alpha

There are 12 sheets in PDB entry 5GUX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	39	anti-parallel
Strand 5	L	42	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	144	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	111	114	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	185	195	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	185	195	anti-parallel
Strand 4	H	180	182	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	165	first strand
Strand 2	H	205	210	anti-parallel
Strand 3	H	215	220	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	70	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GUX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GUX