Analysis of interatomic Contacts of Structural Units in PDB entry:
5GV3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GV3 entry

There are 2 chains in PDB entry 5GV3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 25GLN 189
B
 ASP 25GLU 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 5GV3. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
186 189Right-handed 310
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There are 8 sheets in PDB entry 5GV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 32first strand
Strand 2
A
35 52anti-parallel
Strand 3
A
160 170anti-parallel
Strand 4
A
153 157anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 63first strand
Strand 2
A
35 52anti-parallel
Strand 3
A
160 170anti-parallel
Strand 4
A
146 149anti-parallel
Strand 5
A
182 184parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 88first strand
Strand 2
A
92 100anti-parallel
Strand 3
A
105 115anti-parallel
Strand 4
A
130 134anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 88first strand
Strand 2
A
92 100anti-parallel
Strand 3
A
105 115anti-parallel
Strand 4
A
139 141anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 32first strand
Strand 2
B
35 51anti-parallel
Strand 3
B
160 170anti-parallel
Strand 4
B
153 157anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 63first strand
Strand 2
B
35 51anti-parallel
Strand 3
B
160 170anti-parallel
Strand 4
B
146 149anti-parallel
Strand 5
B
182 184parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 87first strand
Strand 2
B
92 100anti-parallel
Strand 3
B
104 115anti-parallel
Strand 4
B
130 134anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 87first strand
Strand 2
B
92 100anti-parallel
Strand 3
B
104 115anti-parallel
Strand 4
B
139 142anti-parallel
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