Analysis of interatomic Contacts of Structural Units in PDB entry:
5GV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GV5 entry

There are 8 chains in PDB entry 5GV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 1	PRO 317
B	LEU 1	PRO 317
C	LEU 1	PRO 317
D	LEU 1	PRO 317
E	LEU 1	PRO 317
F	LEU 1	PRO 317
G	LEU 1	PRO 317
H	LEU 1	PRO 317

There are135 helices in PDB entry 5GV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	18	Right-handed alpha
Helix 2	AA2	A	43	49	Right-handed alpha
Helix 3	AA3	A	51	59	Right-handed alpha
Helix 4	AA4	A	75	94	Right-handed alpha
Helix 5	AA5	A	105	118	Right-handed alpha
Helix 6	AA6	A	119	122	Right-handed 310
Helix 7	AA7	A	138	140	Right-handed 310
Helix 8	AA8	A	141	147	Right-handed alpha
Helix 9	AA9	A	151	157	Right-handed alpha
Helix 10	AB1	A	161	170	Right-handed alpha
Helix 11	AB2	A	212	217	Right-handed alpha
Helix 12	AB3	A	225	230	Right-handed alpha
Helix 13	AB4	A	230	243	Right-handed alpha
Helix 14	AB5	A	249	253	Right-handed 310
Helix 15	AB6	A	254	258	Right-handed 310
Helix 16	AB7	A	267	276	Right-handed alpha
Helix 17	AB8	A	278	287	Right-handed alpha
Helix 18	AB9	A	298	305	Right-handed 310
Helix 19	AC1	B	12	19	Right-handed alpha
Helix 20	AC2	B	43	49	Right-handed alpha
Helix 21	AC3	B	51	59	Right-handed alpha
Helix 22	AC4	B	75	94	Right-handed alpha
Helix 23	AC5	B	105	118	Right-handed alpha
Helix 24	AC6	B	118	123	Right-handed alpha
Helix 25	AC7	B	141	147	Right-handed alpha
Helix 26	AC8	B	151	156	Right-handed alpha
Helix 27	AC9	B	161	170	Right-handed alpha
Helix 28	AD1	B	212	217	Right-handed alpha
Helix 29	AD2	B	225	230	Right-handed alpha
Helix 30	AD3	B	230	243	Right-handed alpha
Helix 31	AD4	B	249	253	Right-handed 310
Helix 32	AD5	B	254	258	Right-handed 310
Helix 33	AD6	B	267	276	Right-handed alpha
Helix 34	AD7	B	277	287	Right-handed alpha
Helix 35	AD8	B	301	306	Right-handed 310
Helix 36	AD9	C	12	19	Right-handed alpha
Helix 37	AE1	C	43	49	Right-handed alpha
Helix 38	AE2	C	51	59	Right-handed alpha
Helix 39	AE3	C	75	94	Right-handed alpha
Helix 40	AE4	C	105	118	Right-handed alpha
Helix 41	AE5	C	119	123	Right-handed 310
Helix 42	AE6	C	151	157	Right-handed alpha
Helix 43	AE7	C	161	170	Right-handed alpha
Helix 44	AE8	C	212	217	Right-handed alpha
Helix 45	AE9	C	225	230	Right-handed alpha
Helix 46	AF1	C	230	243	Right-handed alpha
Helix 47	AF2	C	249	253	Right-handed 310
Helix 48	AF3	C	254	258	Right-handed 310
Helix 49	AF4	C	267	276	Right-handed alpha
Helix 50	AF5	C	278	288	Right-handed alpha
Helix 51	AF6	C	301	305	Right-handed 310
Helix 52	AF7	D	12	17	Right-handed alpha
Helix 53	AF8	D	43	49	Right-handed alpha
Helix 54	AF9	D	51	60	Right-handed alpha
Helix 55	AG1	D	75	94	Right-handed alpha
Helix 56	AG2	D	105	118	Right-handed alpha
Helix 57	AG3	D	119	122	Right-handed 310
Helix 58	AG4	D	151	157	Right-handed alpha
Helix 59	AG5	D	161	170	Right-handed alpha
Helix 60	AG6	D	212	217	Right-handed alpha
Helix 61	AG7	D	225	230	Right-handed alpha
Helix 62	AG8	D	230	243	Right-handed alpha
Helix 63	AG9	D	249	253	Right-handed 310
Helix 64	AH1	D	254	258	Right-handed 310
Helix 65	AH2	D	267	276	Right-handed alpha
Helix 66	AH3	D	278	288	Right-handed alpha
Helix 67	AH4	D	301	305	Right-handed 310
Helix 68	AH5	E	12	19	Right-handed alpha
Helix 69	AH6	E	43	49	Right-handed alpha
Helix 70	AH7	E	51	59	Right-handed alpha
Helix 71	AH8	E	75	94	Right-handed alpha
Helix 72	AH9	E	105	118	Right-handed alpha
Helix 73	AI1	E	119	123	Right-handed 310
Helix 74	AI2	E	151	157	Right-handed alpha
Helix 75	AI3	E	161	170	Right-handed alpha
Helix 76	AI4	E	212	217	Right-handed alpha
Helix 77	AI5	E	225	230	Right-handed alpha
Helix 78	AI6	E	230	243	Right-handed alpha
Helix 79	AI7	E	249	253	Right-handed 310
Helix 80	AI8	E	254	258	Right-handed 310
Helix 81	AI9	E	267	275	Right-handed alpha
Helix 82	AJ1	E	278	288	Right-handed alpha
Helix 83	AJ2	E	301	306	Right-handed 310
Helix 84	AJ3	F	12	19	Right-handed alpha
Helix 85	AJ4	F	43	49	Right-handed alpha
Helix 86	AJ5	F	51	60	Right-handed alpha
Helix 87	AJ6	F	75	94	Right-handed alpha
Helix 88	AJ7	F	105	118	Right-handed alpha
Helix 89	AJ8	F	119	122	Right-handed 310
Helix 90	AJ9	F	140	146	Right-handed alpha
Helix 91	AK1	F	151	157	Right-handed alpha
Helix 92	AK2	F	161	170	Right-handed alpha
Helix 93	AK3	F	212	217	Right-handed alpha
Helix 94	AK4	F	223	230	Right-handed alpha
Helix 95	AK5	F	230	243	Right-handed alpha
Helix 96	AK6	F	249	253	Right-handed 310
Helix 97	AK7	F	254	258	Right-handed 310
Helix 98	AK8	F	267	276	Right-handed alpha
Helix 99	AK9	F	277	288	Right-handed alpha
Helix 100	AL1	F	301	306	Right-handed 310
Helix 101	AL2	G	12	19	Right-handed alpha
Helix 102	AL3	G	43	49	Right-handed alpha
Helix 103	AL4	G	51	59	Right-handed alpha
Helix 104	AL5	G	75	94	Right-handed alpha
Helix 105	AL6	G	105	118	Right-handed alpha
Helix 106	AL7	G	119	123	Right-handed 310
Helix 107	AL8	G	141	147	Right-handed alpha
Helix 108	AL9	G	151	157	Right-handed alpha
Helix 109	AM1	G	161	170	Right-handed alpha
Helix 110	AM2	G	212	217	Right-handed alpha
Helix 111	AM3	G	223	230	Right-handed alpha
Helix 112	AM4	G	230	243	Right-handed alpha
Helix 113	AM5	G	249	253	Right-handed 310
Helix 114	AM6	G	254	258	Right-handed 310
Helix 115	AM7	G	267	276	Right-handed alpha
Helix 116	AM8	G	278	288	Right-handed alpha
Helix 117	AM9	G	301	306	Right-handed 310
Helix 118	AN1	H	12	18	Right-handed alpha
Helix 119	AN2	H	43	49	Right-handed alpha
Helix 120	AN3	H	51	59	Right-handed alpha
Helix 121	AN4	H	75	93	Right-handed alpha
Helix 122	AN5	H	105	118	Right-handed alpha
Helix 123	AN6	H	119	123	Right-handed 310
Helix 124	AN7	H	138	140	Right-handed 310
Helix 125	AN8	H	141	147	Right-handed alpha
Helix 126	AN9	H	151	157	Right-handed alpha
Helix 127	AO1	H	161	170	Right-handed alpha
Helix 128	AO2	H	212	217	Right-handed alpha
Helix 129	AO3	H	225	230	Right-handed alpha
Helix 130	AO4	H	230	243	Right-handed alpha
Helix 131	AO5	H	249	253	Right-handed 310
Helix 132	AO6	H	254	258	Right-handed 310
Helix 133	AO7	H	267	276	Right-handed alpha
Helix 134	AO8	H	277	287	Right-handed alpha
Helix 135	AO9	H	301	305	Right-handed 310

There are 13 sheets in PDB entry 5GV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	62	66	anti-parallel
Strand 3	A	33	37	parallel
Strand 4	A	99	104	parallel
Strand 5	A	125	131	parallel
Strand 6	A	179	183	parallel
Strand 7	A	208	211	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	A	313	314	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	62	66	anti-parallel
Strand 3	B	33	37	parallel
Strand 4	B	99	104	parallel
Strand 5	B	125	131	parallel
Strand 6	B	179	183	parallel
Strand 7	B	208	211	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	B	313	314	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	62	66	anti-parallel
Strand 3	C	33	37	parallel
Strand 4	C	99	104	parallel
Strand 5	C	125	131	parallel
Strand 6	C	179	183	parallel
Strand 7	C	208	211	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	22	first strand
Strand 2	D	62	66	anti-parallel
Strand 3	D	33	37	parallel
Strand 4	D	99	104	parallel
Strand 5	D	125	131	parallel
Strand 6	D	179	183	parallel
Strand 7	D	208	211	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	310	first strand
Strand 2	D	313	314	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	22	first strand
Strand 2	E	62	66	anti-parallel
Strand 3	E	33	37	parallel
Strand 4	E	99	104	parallel
Strand 5	E	125	131	parallel
Strand 6	E	179	183	parallel
Strand 7	E	208	211	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	22	first strand
Strand 2	F	62	66	anti-parallel
Strand 3	F	33	37	parallel
Strand 4	F	99	104	parallel
Strand 5	F	125	131	parallel
Strand 6	F	179	183	parallel
Strand 7	F	208	211	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	22	first strand
Strand 2	G	62	66	anti-parallel
Strand 3	G	33	37	parallel
Strand 4	G	99	104	parallel
Strand 5	G	125	131	parallel
Strand 6	G	179	183	parallel
Strand 7	G	208	211	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	309	310	first strand
Strand 2	G	313	314	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	22	first strand
Strand 2	H	62	66	anti-parallel
Strand 3	H	33	37	parallel
Strand 4	H	99	104	parallel
Strand 5	H	125	131	parallel
Strand 6	H	179	183	parallel
Strand 7	H	208	211	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	309	310	first strand
Strand 2	H	313	314	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GV5