Analysis of interatomic Contacts of Structural Units in PDB entry:
5GV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GV8 entry

There is 1 chain in PDB entry 5GV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 1001PHE 1272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5GV8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
1096 1105Right-handed alpha
Helix 2
AA2
A
1154 1167Right-handed alpha
Helix 3
AA3
A
1183 1187Right-handed 310
Helix 4
AA4
A
1189 1201Right-handed alpha
Helix 5
AA5
A
1225 1233Right-handed alpha
Helix 6
AA6
A
1235 1239Right-handed 310
Helix 7
AA7
A
1247 1254Right-handed alpha
Helix 8
AA8
A
1255 1263Right-handed alpha
Helix 9
AA9
A
1265 1269Right-handed 310
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There are 3 sheets in PDB entry 5GV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1059 1065first strand
Strand 2
A
1049 1056anti-parallel
Strand 3
A
1110 1117anti-parallel
Strand 4
A
1014 1025anti-parallel
Strand 5
A
1028 1034anti-parallel
Strand 6
A
1076 1082anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1120 1124first strand
Strand 2
A
1127 1130anti-parallel
Strand 3
A
1139 1142anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1220 1221first strand
Strand 2
A
1204 1210parallel
Strand 3
A
1174 1181parallel
Strand 4
A
1145 1151parallel
Strand 5
A
1241 1245parallel
Strand 6
A
1270 1271parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il