Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GVB entry

There is 1 chain in PDB entry 5GVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 424THR 824
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5GVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
652 655Right-handed 310
Helix 2
AA2
A
665 668Right-handed 310
Helix 3
AA3
A
720 735Right-handed alpha
Helix 4
AA4
A
736 745Right-handed alpha
Helix 5
AA5
A
750 775Right-handed alpha
Helix 6
AA6
A
777 787Right-handed alpha
Helix 7
AA7
A
789 801Right-handed alpha
Helix 8
AA8
A
805 824Right-handed alpha
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There are 6 sheets in PDB entry 5GVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 449first strand
Strand 2
A
453 458anti-parallel
Strand 3
A
465 470anti-parallel
Strand 4
A
479 481anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 492first strand
Strand 2
A
497 501anti-parallel
Strand 3
A
510 514anti-parallel
Strand 4
A
524 528anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 540first strand
Strand 2
A
544 549anti-parallel
Strand 3
A
553 558anti-parallel
Strand 4
A
563 568anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 579first strand
Strand 2
A
582 588anti-parallel
Strand 3
A
599 606anti-parallel
Strand 4
A
610 618anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 632first strand
Strand 2
A
638 642anti-parallel
Strand 3
A
646 650anti-parallel
Strand 4
A
658 663anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 681first strand
Strand 2
A
686 692anti-parallel
Strand 3
A
707 709anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il