Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GVC entry

There are 2 chains in PDB entry 5GVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -2SER 612
B
 MET 1SER 612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5GVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 22Right-handed alpha
Helix 2
AA2
A
77 82Right-handed 310
Helix 3
AA3
A
93 96Right-handed 310
Helix 4
AA4
A
97 107Right-handed alpha
Helix 5
AA5
A
119 134Right-handed alpha
Helix 6
AA6
A
135 137Right-handed 310
Helix 7
AA7
A
156 166Right-handed alpha
Helix 8
AA8
A
171 200Right-handed alpha
Helix 9
AA9
A
208 212Right-handed 310
Helix 10
AB1
A
217 234Right-handed alpha
Helix 11
AB2
A
266 276Right-handed alpha
Helix 12
AB3
A
302 313Right-handed alpha
Helix 13
AB4
A
317 331Right-handed alpha
Helix 14
AB5
A
349 356Right-handed alpha
Helix 15
AB6
A
363 374Right-handed alpha
Helix 16
AB7
A
397 402Right-handed alpha
Helix 17
AB8
A
402 420Right-handed alpha
Helix 18
AB9
A
450 455Right-handed 310
Helix 19
AC1
A
456 460Right-handed 310
Helix 20
AC2
A
495 506Right-handed alpha
Helix 21
AC3
A
513 524Right-handed alpha
Helix 22
AC4
A
538 552Right-handed alpha
Helix 23
AC5
A
553 556Right-handed 310
Helix 24
AC6
A
558 573Right-handed alpha
Helix 25
AC7
A
577 599Right-handed alpha
Helix 26
AC8
A
600 611Right-handed alpha
Helix 27
AC9
B
10 22Right-handed alpha
Helix 28
AD1
B
77 82Right-handed 310
Helix 29
AD2
B
93 96Right-handed 310
Helix 30
AD3
B
97 107Right-handed alpha
Helix 31
AD4
B
119 134Right-handed alpha
Helix 32
AD5
B
135 137Right-handed 310
Helix 33
AD6
B
156 166Right-handed alpha
Helix 34
AD7
B
171 200Right-handed alpha
Helix 35
AD8
B
208 212Right-handed 310
Helix 36
AD9
B
217 234Right-handed alpha
Helix 37
AE1
B
266 279Right-handed alpha
Helix 38
AE2
B
302 313Right-handed alpha
Helix 39
AE3
B
317 331Right-handed alpha
Helix 40
AE4
B
349 356Right-handed alpha
Helix 41
AE5
B
363 374Right-handed alpha
Helix 42
AE6
B
402 420Right-handed alpha
Helix 43
AE7
B
450 455Right-handed 310
Helix 44
AE8
B
456 460Right-handed 310
Helix 45
AE9
B
495 506Right-handed alpha
Helix 46
AF1
B
513 524Right-handed alpha
Helix 47
AF2
B
538 552Right-handed alpha
Helix 48
AF3
B
553 556Right-handed 310
Helix 49
AF4
B
558 573Right-handed alpha
Helix 50
AF5
B
577 599Right-handed alpha
Helix 51
AF6
B
600 611Right-handed alpha
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There are 8 sheets in PDB entry 5GVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
3 8parallel
Strand 5
A
111 115parallel
Strand 6
A
147 149parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
87 91anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 248first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
438 449anti-parallel
Strand 4
A
424 435anti-parallel
Strand 5
A
282 295anti-parallel
Strand 6
A
475 487anti-parallel
Strand 7
A
239 248anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 530first strand
Strand 2
A
534 537anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
49 56anti-parallel
Strand 4
B
2 8parallel
Strand 5
B
111 115parallel
Strand 6
B
147 149parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
87 91anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 248first strand
Strand 2
B
254 259anti-parallel
Strand 3
B
438 449anti-parallel
Strand 4
B
424 435anti-parallel
Strand 5
B
282 295anti-parallel
Strand 6
B
475 487anti-parallel
Strand 7
B
239 248anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 530first strand
Strand 2
B
534 537anti-parallel
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