Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GVH entry

There is 1 chain in PDB entry 5GVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ILE 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5GVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed alpha
Helix 2
AA2
A
27 37Right-handed alpha
Helix 3
AA3
A
49 62Right-handed alpha
Helix 4
AA4
A
78 89Right-handed alpha
Helix 5
AA5
A
101 111Right-handed alpha
Helix 6
AA6
A
121 132Right-handed alpha
Helix 7
AA7
A
151 163Right-handed alpha
Helix 8
AA8
A
175 185Right-handed alpha
Helix 9
AA9
A
193 198Right-handed alpha
Helix 10
AB1
A
205 214Right-handed alpha
Helix 11
AB2
A
236 249Right-handed alpha
Helix 12
AB3
A
249 257Right-handed alpha
Helix 13
AB4
A
259 266Right-handed alpha
Helix 14
AB5
A
278 284Right-handed 310
Helix 15
AB6
A
289 311Right-handed alpha
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There are 2 sheets in PDB entry 5GVH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
190 192parallel
Strand 3
A
167 170parallel
Strand 4
A
136 139parallel
Strand 5
A
114 119parallel
Strand 6
A
93 96parallel
Strand 7
A
69 72parallel
Strand 8
A
42 44parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
231 234anti-parallel
Strand 3
A
220 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il