Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GVI entry

There are 3 chains in PDB entry 5GVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 58PRO 495
B
 MET 1GLY 76
C
 MET 1ARG 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5GVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 83Right-handed alpha
Helix 2
AA2
A
85 96Right-handed alpha
Helix 3
AA3
A
110 123Right-handed alpha
Helix 4
AA4
A
136 147Right-handed alpha
Helix 5
AA5
A
157 174Right-handed alpha
Helix 6
AA6
A
262 271Right-handed alpha
Helix 7
AA7
A
280 286Right-handed alpha
Helix 8
AA8
A
348 351Right-handed 310
Helix 9
AA9
A
475 481Right-handed alpha
Helix 10
AB1
B
22 35Right-handed alpha
Helix 11
AB2
B
37 41Right-handed 310
Helix 12
AB3
B
56 60Right-handed 310
Helix 13
AB4
C
22 35Right-handed alpha
Helix 14
AB5
C
37 39Right-handed 310
Helix 15
AB6
C
56 60Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 5GVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
133 134parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 279first strand
Strand 2
A
301 312anti-parallel
Strand 3
A
222 230anti-parallel
Strand 4
A
240 244anti-parallel
Strand 5
A
379 380parallel
Strand 6
A
383 384anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
316 322parallel
Strand 3
A
484 491anti-parallel
Strand 4
A
425 436anti-parallel
Strand 5
A
344 346anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
316 322parallel
Strand 3
A
484 491anti-parallel
Strand 4
A
425 436anti-parallel
Strand 5
A
441 448anti-parallel
Strand 6
A
463 467anti-parallel
Strand 7
A
470 474anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
339 340parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
332 334anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
42 45anti-parallel
Strand 5
B
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il