Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GVJ entry

There are 2 chains in PDB entry 5GVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ILE 312
B
 VAL 3ILE 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5GVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 12Right-handed alpha
Helix 2
AA2
A
27 37Right-handed alpha
Helix 3
AA3
A
49 64Right-handed alpha
Helix 4
AA4
A
78 89Right-handed alpha
Helix 5
AA5
A
101 111Right-handed alpha
Helix 6
AA6
A
121 131Right-handed alpha
Helix 7
AA7
A
151 163Right-handed alpha
Helix 8
AA8
A
175 186Right-handed alpha
Helix 9
AA9
A
192 198Right-handed alpha
Helix 10
AB1
A
205 215Right-handed alpha
Helix 11
AB2
A
236 243Right-handed alpha
Helix 12
AB3
A
259 266Right-handed alpha
Helix 13
AB4
A
278 284Right-handed 310
Helix 14
AB5
A
289 310Right-handed alpha
Helix 15
AB6
B
5 12Right-handed alpha
Helix 16
AB7
B
27 37Right-handed alpha
Helix 17
AB8
B
49 64Right-handed alpha
Helix 18
AB9
B
78 89Right-handed alpha
Helix 19
AC1
B
101 111Right-handed alpha
Helix 20
AC2
B
121 131Right-handed alpha
Helix 21
AC3
B
151 163Right-handed alpha
Helix 22
AC4
B
175 185Right-handed alpha
Helix 23
AC5
B
192 198Right-handed alpha
Helix 24
AC6
B
205 215Right-handed alpha
Helix 25
AC7
B
236 244Right-handed alpha
Helix 26
AC8
B
259 266Right-handed alpha
Helix 27
AC9
B
278 284Right-handed 310
Helix 28
AD1
B
289 312Right-handed alpha
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There are 4 sheets in PDB entry 5GVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
189 191parallel
Strand 3
A
167 170parallel
Strand 4
A
136 139parallel
Strand 5
A
114 119parallel
Strand 6
A
93 97parallel
Strand 7
A
68 73parallel
Strand 8
A
41 44parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
231 234anti-parallel
Strand 3
A
220 223anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
189 191parallel
Strand 3
B
167 170parallel
Strand 4
B
136 139parallel
Strand 5
B
114 119parallel
Strand 6
B
93 97parallel
Strand 7
B
68 73parallel
Strand 8
B
41 44parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
231 234anti-parallel
Strand 3
B
220 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il