Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GVP entry

There are 3 chains in PDB entry 5GVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 442
B
 MET 1PRO 442
C
 MET 1PRO 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 5GVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
11 27Right-handed alpha
Helix 3
AA3
A
39 47Right-handed alpha
Helix 4
AA4
A
48 53Right-handed 310
Helix 5
AA5
A
67 85Right-handed alpha
Helix 6
AA6
A
100 114Right-handed alpha
Helix 7
AA7
A
124 127Right-handed 310
Helix 8
AA8
A
129 133Right-handed 310
Helix 9
AA9
A
142 146Right-handed 310
Helix 10
AB1
A
162 174Right-handed alpha
Helix 11
AB2
A
190 202Right-handed alpha
Helix 12
AB3
A
212 218Right-handed alpha
Helix 13
AB4
A
223 227Right-handed 310
Helix 14
AB5
A
256 266Right-handed alpha
Helix 15
AB6
A
274 289Right-handed alpha
Helix 16
AB7
A
290 314Right-handed alpha
Helix 17
AB8
A
320 322Right-handed 310
Helix 18
AB9
A
333 336Right-handed 310
Helix 19
AC1
A
338 349Right-handed alpha
Helix 20
AC2
A
374 381Right-handed alpha
Helix 21
AC3
A
383 385Right-handed 310
Helix 22
AC4
A
386 409Right-handed alpha
Helix 23
AC5
A
411 418Right-handed alpha
Helix 24
AC6
A
422 439Right-handed alpha
Helix 25
AC7
B
6 11Right-handed alpha
Helix 26
AC8
B
11 27Right-handed alpha
Helix 27
AC9
B
39 47Right-handed alpha
Helix 28
AD1
B
48 53Right-handed 310
Helix 29
AD2
B
67 85Right-handed alpha
Helix 30
AD3
B
100 114Right-handed alpha
Helix 31
AD4
B
124 127Right-handed 310
Helix 32
AD5
B
129 133Right-handed 310
Helix 33
AD6
B
142 146Right-handed 310
Helix 34
AD7
B
162 174Right-handed alpha
Helix 35
AD8
B
190 201Right-handed alpha
Helix 36
AD9
B
212 218Right-handed alpha
Helix 37
AE1
B
223 227Right-handed 310
Helix 38
AE2
B
256 266Right-handed alpha
Helix 39
AE3
B
274 289Right-handed alpha
Helix 40
AE4
B
290 314Right-handed alpha
Helix 41
AE5
B
320 322Right-handed 310
Helix 42
AE6
B
333 336Right-handed 310
Helix 43
AE7
B
338 349Right-handed alpha
Helix 44
AE8
B
374 380Right-handed alpha
Helix 45
AE9
B
383 385Right-handed 310
Helix 46
AF1
B
386 409Right-handed alpha
Helix 47
AF2
B
411 418Right-handed alpha
Helix 48
AF3
B
422 437Right-handed alpha
Helix 49
AF4
C
6 11Right-handed alpha
Helix 50
AF5
C
11 27Right-handed alpha
Helix 51
AF6
C
39 47Right-handed alpha
Helix 52
AF7
C
48 53Right-handed 310
Helix 53
AF8
C
67 85Right-handed alpha
Helix 54
AF9
C
100 114Right-handed alpha
Helix 55
AG1
C
124 127Right-handed 310
Helix 56
AG2
C
129 133Right-handed 310
Helix 57
AG3
C
142 146Right-handed 310
Helix 58
AG4
C
162 174Right-handed alpha
Helix 59
AG5
C
190 202Right-handed alpha
Helix 60
AG6
C
212 218Right-handed alpha
Helix 61
AG7
C
223 227Right-handed 310
Helix 62
AG8
C
256 266Right-handed alpha
Helix 63
AG9
C
274 289Right-handed alpha
Helix 64
AH1
C
290 314Right-handed alpha
Helix 65
AH2
C
320 322Right-handed 310
Helix 66
AH3
C
333 336Right-handed 310
Helix 67
AH4
C
338 349Right-handed alpha
Helix 68
AH5
C
374 380Right-handed alpha
Helix 69
AH6
C
383 385Right-handed 310
Helix 70
AH7
C
386 409Right-handed alpha
Helix 71
AH8
C
411 418Right-handed alpha
Helix 72
AH9
C
422 439Right-handed alpha
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There are 12 sheets in PDB entry 5GVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
351 352parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
61 62anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
245 250anti-parallel
Strand 3
A
230 234anti-parallel
Strand 4
A
204 208parallel
Strand 5
A
177 180parallel
Strand 6
A
118 122parallel
Strand 7
A
149 153parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
327 331anti-parallel
Strand 3
A
369 373anti-parallel
Strand 4
A
354 356anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
351 352parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
61 62anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 95first strand
Strand 2
B
245 250anti-parallel
Strand 3
B
230 234anti-parallel
Strand 4
B
204 208parallel
Strand 5
B
177 180parallel
Strand 6
B
118 122parallel
Strand 7
B
149 153parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 318first strand
Strand 2
B
327 331anti-parallel
Strand 3
B
369 373anti-parallel
Strand 4
B
354 356anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 30first strand
Strand 2
C
351 352parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 58first strand
Strand 2
C
61 62anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 95first strand
Strand 2
C
245 250anti-parallel
Strand 3
C
230 234anti-parallel
Strand 4
C
204 208parallel
Strand 5
C
177 180parallel
Strand 6
C
117 122parallel
Strand 7
C
148 153parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 318first strand
Strand 2
C
327 331anti-parallel
Strand 3
C
369 373anti-parallel
Strand 4
C
354 356anti-parallel
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