Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GVR entry

There is 1 chain in PDB entry 5GVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 169GLY 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5GVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 199Right-handed alpha
Helix 2
AA2
A
205 217Right-handed alpha
Helix 3
AA3
A
230 250Right-handed alpha
Helix 4
AA4
A
266 287Right-handed alpha
Helix 5
AA5
A
302 312Right-handed alpha
Helix 6
AA6
A
320 330Right-handed alpha
Helix 7
AA7
A
345 352Right-handed alpha
Helix 8
AA8
A
354 363Right-handed alpha
Helix 9
AA9
A
379 390Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5GVR.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
394 397anti-parallel
Strand 3
A
221 224parallel
Strand 4
A
370 375parallel
Strand 5
A
340 344parallel
Strand 6
A
260 263parallel
Strand 7
A
316 319parallel
Strand 8
A
294 297parallel
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