Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GVU entry

There are 3 chains in PDB entry 5GVU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 208	LEU 683
B	GLU 208	LEU 683
C	GLU 208	LEU 683

There are 55 helices in PDB entry 5GVU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	209	214	Right-handed alpha
Helix 2	AA2	A	231	245	Right-handed alpha
Helix 3	AA3	A	256	271	Right-handed alpha
Helix 4	AA4	A	297	301	Right-handed alpha
Helix 5	AA5	A	304	313	Right-handed alpha
Helix 6	AA6	A	322	326	Right-handed 310
Helix 7	AA7	A	327	338	Right-handed alpha
Helix 8	AA8	A	339	344	Right-handed 310
Helix 9	AA9	A	393	398	Right-handed 310
Helix 10	AB1	A	409	420	Right-handed alpha
Helix 11	AB2	A	435	442	Right-handed alpha
Helix 12	AB3	A	496	505	Right-handed alpha
Helix 13	AB4	A	528	536	Right-handed alpha
Helix 14	AB5	A	537	540	Right-handed 310
Helix 15	AB6	A	545	557	Right-handed alpha
Helix 16	AB7	A	563	578	Right-handed alpha
Helix 17	AB8	A	583	593	Right-handed alpha
Helix 18	AB9	A	598	605	Right-handed alpha
Helix 19	AC1	A	649	658	Right-handed alpha
Helix 20	AC2	A	667	683	Right-handed alpha
Helix 21	AC3	B	209	215	Right-handed alpha
Helix 22	AC4	B	234	245	Right-handed alpha
Helix 23	AC5	B	256	271	Right-handed alpha
Helix 24	AC6	B	297	302	Right-handed alpha
Helix 25	AC7	B	304	313	Right-handed alpha
Helix 26	AC8	B	323	326	Right-handed 310
Helix 27	AC9	B	327	337	Right-handed alpha
Helix 28	AD1	B	340	344	Right-handed 310
Helix 29	AD2	B	500	505	Right-handed alpha
Helix 30	AD3	B	528	536	Right-handed alpha
Helix 31	AD4	B	537	540	Right-handed 310
Helix 32	AD5	B	545	558	Right-handed alpha
Helix 33	AD6	B	563	578	Right-handed alpha
Helix 34	AD7	B	583	593	Right-handed alpha
Helix 35	AD8	B	598	605	Right-handed alpha
Helix 36	AD9	B	649	658	Right-handed alpha
Helix 37	AE1	B	667	682	Right-handed alpha
Helix 38	AE2	C	209	215	Right-handed alpha
Helix 39	AE3	C	231	242	Right-handed alpha
Helix 40	AE4	C	257	269	Right-handed alpha
Helix 41	AE5	C	297	301	Right-handed alpha
Helix 42	AE6	C	304	313	Right-handed alpha
Helix 43	AE7	C	323	326	Right-handed 310
Helix 44	AE8	C	327	338	Right-handed alpha
Helix 45	AE9	C	339	343	Right-handed 310
Helix 46	AF1	C	407	417	Right-handed alpha
Helix 47	AF2	C	496	502	Right-handed alpha
Helix 48	AF3	C	528	536	Right-handed alpha
Helix 49	AF4	C	537	540	Right-handed 310
Helix 50	AF5	C	545	558	Right-handed alpha
Helix 51	AF6	C	563	578	Right-handed alpha
Helix 52	AF7	C	583	593	Right-handed alpha
Helix 53	AF8	C	598	605	Right-handed alpha
Helix 54	AF9	C	649	658	Right-handed alpha
Helix 55	AG1	C	667	682	Right-handed alpha

There are 14 sheets in PDB entry 5GVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	224	first strand
Strand 2	A	346	349	parallel
Strand 3	A	317	320	parallel
Strand 4	A	250	254	parallel
Strand 5	A	292	296	parallel
Strand 6	A	276	279	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	370	first strand
Strand 2	A	513	517	parallel
Strand 3	A	465	468	parallel
Strand 4	A	401	404	parallel
Strand 5	A	447	450	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	390	392	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	479	first strand
Strand 2	A	486	494	anti-parallel
Strand 3	A	646	648	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	613	first strand
Strand 2	A	635	636	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	617	618	first strand
Strand 2	A	621	622	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	224	first strand
Strand 2	B	346	349	parallel
Strand 3	B	317	321	parallel
Strand 4	B	250	254	parallel
Strand 5	B	292	296	parallel
Strand 6	B	276	279	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	479	first strand
Strand 2	B	486	492	anti-parallel
Strand 3	B	646	648	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	613	first strand
Strand 2	B	635	636	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	617	618	first strand
Strand 2	B	621	622	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	224	first strand
Strand 2	C	345	349	parallel
Strand 3	C	317	321	parallel
Strand 4	C	250	254	parallel
Strand 5	C	292	296	parallel
Strand 6	C	276	279	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	479	first strand
Strand 2	C	486	494	anti-parallel
Strand 3	C	646	648	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	612	613	first strand
Strand 2	C	635	636	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	615	618	first strand
Strand 2	C	621	626	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GVU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVU