Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GVV entry

There are 2 chains in PDB entry 5GVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ARG 406
F
 LYS 5ARG 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5GVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 15Right-handed 310
Helix 2
AA2
A
16 31Right-handed alpha
Helix 3
AA3
A
44 58Right-handed alpha
Helix 4
AA4
A
88 96Right-handed 310
Helix 5
AA5
A
115 120Right-handed alpha
Helix 6
AA6
A
133 137Right-handed 310
Helix 7
AA7
A
150 156Right-handed alpha
Helix 8
AA8
A
157 168Right-handed alpha
Helix 9
AA9
A
175 186Right-handed alpha
Helix 10
AB1
A
193 197Right-handed 310
Helix 11
AB2
A
199 201Right-handed 310
Helix 12
AB3
A
202 209Right-handed alpha
Helix 13
AB4
A
211 217Right-handed 310
Helix 14
AB5
A
243 252Right-handed alpha
Helix 15
AB6
A
254 264Right-handed alpha
Helix 16
AB7
A
291 299Right-handed alpha
Helix 17
AB8
A
313 318Right-handed alpha
Helix 18
AB9
A
319 322Right-handed 310
Helix 19
AC1
A
332 343Right-handed alpha
Helix 20
AC2
A
355 365Right-handed alpha
Helix 21
AC3
A
381 385Right-handed 310
Helix 22
AC4
A
394 403Right-handed alpha
Helix 23
AC5
F
13 15Right-handed 310
Helix 24
AC6
F
16 31Right-handed alpha
Helix 25
AC7
F
44 58Right-handed alpha
Helix 26
AC8
F
88 91Right-handed 310
Helix 27
AC9
F
92 97Right-handed alpha
Helix 28
AD1
F
115 120Right-handed alpha
Helix 29
AD2
F
134 137Right-handed 310
Helix 30
AD3
F
150 156Right-handed alpha
Helix 31
AD4
F
157 168Right-handed alpha
Helix 32
AD5
F
175 186Right-handed alpha
Helix 33
AD6
F
193 197Right-handed 310
Helix 34
AD7
F
199 201Right-handed 310
Helix 35
AD8
F
202 210Right-handed alpha
Helix 36
AD9
F
211 217Right-handed 310
Helix 37
AE1
F
243 252Right-handed alpha
Helix 38
AE2
F
254 264Right-handed alpha
Helix 39
AE3
F
291 299Right-handed alpha
Helix 40
AE4
F
313 318Right-handed alpha
Helix 41
AE5
F
319 322Right-handed 310
Helix 42
AE6
F
332 343Right-handed alpha
Helix 43
AE7
F
355 365Right-handed alpha
Helix 44
AE8
F
394 402Right-handed alpha
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There are 6 sheets in PDB entry 5GVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
34 40parallel
Strand 3
A
6 11parallel
Strand 4
A
101 105parallel
Strand 5
A
145 149anti-parallel
Strand 6
A
128 131anti-parallel
Strand 7
A
189 192parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
225 227anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
302 307parallel
Strand 3
A
278 283parallel
Strand 4
A
345 348parallel
Strand 5
A
369 372parallel
Strand 6
A
387 389parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
61 66first strand
Strand 2
F
34 40parallel
Strand 3
F
6 11parallel
Strand 4
F
101 105parallel
Strand 5
F
141 149anti-parallel
Strand 6
F
128 132anti-parallel
Strand 7
F
189 192parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
109 111first strand
Strand 2
F
225 227anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
325 328first strand
Strand 2
F
302 307parallel
Strand 3
F
278 283parallel
Strand 4
F
345 348parallel
Strand 5
F
369 372parallel
Strand 6
F
387 389parallel
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