Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GVW entry

There are 4 chains in PDB entry 5GVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASN 3	ARG 406
A	THR 4	ARG 406
B	LYS 5	ARG 406
D	THR 4	ARG 406

There are 88 helices in PDB entry 5GVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	13	15	Right-handed 310
Helix 2	AA2	C	16	31	Right-handed alpha
Helix 3	AA3	C	44	58	Right-handed alpha
Helix 4	AA4	C	88	91	Right-handed 310
Helix 5	AA5	C	92	97	Right-handed alpha
Helix 6	AA6	C	115	120	Right-handed alpha
Helix 7	AA7	C	134	137	Right-handed 310
Helix 8	AA8	C	150	156	Right-handed alpha
Helix 9	AA9	C	157	168	Right-handed alpha
Helix 10	AB1	C	177	186	Right-handed alpha
Helix 11	AB2	C	193	197	Right-handed 310
Helix 12	AB3	C	199	201	Right-handed 310
Helix 13	AB4	C	202	209	Right-handed alpha
Helix 14	AB5	C	211	217	Right-handed 310
Helix 15	AB6	C	243	252	Right-handed alpha
Helix 16	AB7	C	254	265	Right-handed alpha
Helix 17	AB8	C	291	299	Right-handed alpha
Helix 18	AB9	C	313	318	Right-handed alpha
Helix 19	AC1	C	319	322	Right-handed 310
Helix 20	AC2	C	332	343	Right-handed alpha
Helix 21	AC3	C	355	365	Right-handed alpha
Helix 22	AC4	C	394	404	Right-handed alpha
Helix 23	AC5	A	13	15	Right-handed 310
Helix 24	AC6	A	16	31	Right-handed alpha
Helix 25	AC7	A	44	58	Right-handed alpha
Helix 26	AC8	A	88	91	Right-handed 310
Helix 27	AC9	A	92	97	Right-handed alpha
Helix 28	AD1	A	115	121	Right-handed alpha
Helix 29	AD2	A	134	137	Right-handed 310
Helix 30	AD3	A	150	156	Right-handed alpha
Helix 31	AD4	A	157	170	Right-handed alpha
Helix 32	AD5	A	175	185	Right-handed alpha
Helix 33	AD6	A	193	197	Right-handed 310
Helix 34	AD7	A	199	201	Right-handed 310
Helix 35	AD8	A	202	209	Right-handed alpha
Helix 36	AD9	A	211	217	Right-handed 310
Helix 37	AE1	A	243	252	Right-handed alpha
Helix 38	AE2	A	254	265	Right-handed alpha
Helix 39	AE3	A	291	299	Right-handed alpha
Helix 40	AE4	A	313	318	Right-handed alpha
Helix 41	AE5	A	319	322	Right-handed 310
Helix 42	AE6	A	332	343	Right-handed alpha
Helix 43	AE7	A	355	363	Right-handed alpha
Helix 44	AE8	A	394	403	Right-handed alpha
Helix 45	AE9	B	13	15	Right-handed 310
Helix 46	AF1	B	16	31	Right-handed alpha
Helix 47	AF2	B	44	58	Right-handed alpha
Helix 48	AF3	B	88	91	Right-handed 310
Helix 49	AF4	B	92	97	Right-handed alpha
Helix 50	AF5	B	115	120	Right-handed alpha
Helix 51	AF6	B	133	137	Right-handed 310
Helix 52	AF7	B	150	156	Right-handed alpha
Helix 53	AF8	B	157	168	Right-handed alpha
Helix 54	AF9	B	175	186	Right-handed alpha
Helix 55	AG1	B	193	197	Right-handed 310
Helix 56	AG2	B	199	201	Right-handed 310
Helix 57	AG3	B	202	209	Right-handed alpha
Helix 58	AG4	B	213	217	Right-handed 310
Helix 59	AG5	B	243	252	Right-handed alpha
Helix 60	AG6	B	254	265	Right-handed alpha
Helix 61	AG7	B	291	299	Right-handed alpha
Helix 62	AG8	B	313	318	Right-handed alpha
Helix 63	AG9	B	319	322	Right-handed 310
Helix 64	AH1	B	332	342	Right-handed alpha
Helix 65	AH2	B	355	365	Right-handed alpha
Helix 66	AH3	B	393	403	Right-handed alpha
Helix 67	AH4	D	13	15	Right-handed 310
Helix 68	AH5	D	16	31	Right-handed alpha
Helix 69	AH6	D	44	58	Right-handed alpha
Helix 70	AH7	D	88	91	Right-handed 310
Helix 71	AH8	D	92	97	Right-handed alpha
Helix 72	AH9	D	115	121	Right-handed alpha
Helix 73	AI1	D	132	137	Right-handed 310
Helix 74	AI2	D	150	156	Right-handed alpha
Helix 75	AI3	D	157	168	Right-handed alpha
Helix 76	AI4	D	175	186	Right-handed alpha
Helix 77	AI5	D	193	197	Right-handed 310
Helix 78	AI6	D	199	201	Right-handed 310
Helix 79	AI7	D	202	209	Right-handed alpha
Helix 80	AI8	D	211	217	Right-handed 310
Helix 81	AI9	D	243	252	Right-handed alpha
Helix 82	AJ1	D	254	265	Right-handed alpha
Helix 83	AJ2	D	291	299	Right-handed alpha
Helix 84	AJ3	D	313	318	Right-handed alpha
Helix 85	AJ4	D	319	322	Right-handed 310
Helix 86	AJ5	D	332	342	Right-handed alpha
Helix 87	AJ6	D	356	365	Right-handed alpha
Helix 88	AJ7	D	394	404	Right-handed alpha

There are 12 sheets in PDB entry 5GVW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	66	first strand
Strand 2	C	34	40	parallel
Strand 3	C	6	11	parallel
Strand 4	C	101	105	parallel
Strand 5	C	141	149	anti-parallel
Strand 6	C	128	132	anti-parallel
Strand 7	C	189	191	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	225	227	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	302	307	parallel
Strand 3	C	278	283	parallel
Strand 4	C	345	348	parallel
Strand 5	C	369	372	parallel
Strand 6	C	387	389	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	66	first strand
Strand 2	A	34	40	parallel
Strand 3	A	6	11	parallel
Strand 4	A	101	105	parallel
Strand 5	A	141	149	anti-parallel
Strand 6	A	128	132	anti-parallel
Strand 7	A	190	191	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	225	227	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	302	307	parallel
Strand 3	A	278	283	parallel
Strand 4	A	345	348	parallel
Strand 5	A	369	372	parallel
Strand 6	A	387	389	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	66	first strand
Strand 2	B	34	40	parallel
Strand 3	B	6	11	parallel
Strand 4	B	101	105	parallel
Strand 5	B	145	149	anti-parallel
Strand 6	B	128	131	anti-parallel
Strand 7	B	189	192	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	225	227	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	302	307	parallel
Strand 3	B	278	283	parallel
Strand 4	B	345	348	parallel
Strand 5	B	369	372	parallel
Strand 6	B	387	389	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	66	first strand
Strand 2	D	34	40	parallel
Strand 3	D	6	11	parallel
Strand 4	D	101	105	parallel
Strand 5	D	145	149	anti-parallel
Strand 6	D	128	129	anti-parallel
Strand 7	D	189	190	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	111	first strand
Strand 2	D	225	227	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	328	first strand
Strand 2	D	302	307	parallel
Strand 3	D	278	283	parallel
Strand 4	D	345	348	parallel
Strand 5	D	369	372	parallel
Strand 6	D	388	389	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVW