Analysis of interatomic Contacts of Structural Units in PDB entry:
5GVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GVX entry

There is 1 chain in PDB entry 5GVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -3ALA 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5GVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 36Right-handed alpha
Helix 2
AA2
A
49 56Right-handed alpha
Helix 3
AA3
A
60 62Right-handed 310
Helix 4
AA4
A
70 80Right-handed alpha
Helix 5
AA5
A
93 101Right-handed alpha
Helix 6
AA6
A
108 111Right-handed 310
Helix 7
AA7
A
122 124Right-handed 310
Helix 8
AA8
A
126 132Right-handed alpha
Helix 9
AA9
A
158 162Right-handed 310
Helix 10
AB1
A
167 177Right-handed alpha
Helix 11
AB2
A
188 197Right-handed alpha
Helix 12
AB3
A
206 208Right-handed 310
Helix 13
AB4
A
221 226Right-handed alpha
Helix 14
AB5
A
227 243Right-handed alpha
Helix 15
AB6
A
268 284Right-handed alpha
Helix 16
AB7
A
303 314Right-handed alpha
Helix 17
AB8
A
334 339Right-handed alpha
Helix 18
AB9
A
368 386Right-handed alpha
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There are 5 sheets in PDB entry 5GVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-2 1first strand
Strand 2
A
113 116parallel
Strand 3
A
8 9parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
16 20parallel
Strand 3
A
64 68parallel
Strand 4
A
84 88parallel
Strand 5
A
104 106parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
359 360anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 220first strand
Strand 2
A
210 212anti-parallel
Strand 3
A
202 205anti-parallel
Strand 4
A
181 184parallel
Strand 5
A
142 147parallel
Strand 6
A
324 329parallel
Strand 7
A
346 350parallel
Strand 8
A
364 366parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 253first strand
Strand 2
A
256 260anti-parallel
Strand 3
A
293 297anti-parallel
Strand 4
A
286 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il